RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00005044757	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	14683 bases	Strand	Plus strand
Position	KQ004530.1 : 131600 - 146282	RNA binding domain	RRM_5 , RRM_8 , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005045173	RRM_5	PF13893	8.6e-57	1
ENSSSCP00005045173	RRM_5	PF13893	8.6e-57	2
ENSSSCP00005045173	RRM_8	PF11835	1.9e-11	3
ENSSSCP00005045173	RRM_1	PF00076	2e-22	4
ENSSSCP00005045173	RRM_1	PF00076	2e-22	5
ENSSSCP00005045103	RRM_5	PF13893	2.2e-26	1
ENSSSCP00005045197	RRM_5	PF13893	1.8e-06	1
ENSSSCP00005045197	RRM_8	PF11835	3.2e-09	2
ENSSSCP00005045197	RRM_1	PF00076	2.7e-12	3
ENSSSCP00005045197	RRM_1	PF00076	2.7e-12	4
ENSSSCP00005045208	RRM_5	PF13893	1.9e-06	1
ENSSSCP00005045208	RRM_8	PF11835	3.4e-09	2
ENSSSCP00005045208	RRM_1	PF00076	2.8e-12	3
ENSSSCP00005045208	RRM_1	PF00076	2.8e-12	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00005072181	6384	188aa	ENSSSCP00005045103
-	ENSSSCT00005072262	1731	576aa	ENSSSCP00005045173
-	ENSSSCT00005072298	831	276aa	ENSSSCP00005045197
-	ENSSSCT00005072310	840	279aa	ENSSSCP00005045208

Gene Model

Click here to download ENSSSCG00005044757's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005044757's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005036659	68.9243	55.5777	sus_scrofa_wuzhishan	ENSSSCP00005045173	60.0694	48.4375
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005024839	39.212	22.7017	sus_scrofa_wuzhishan	ENSSSCP00005045173	36.2847	21.0069
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005008488	39.6648	23.8361	sus_scrofa_wuzhishan	ENSSSCP00005045173	36.9792	22.2222
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005018675	38.3128	21.6169	sus_scrofa_wuzhishan	ENSSSCP00005045173	37.8472	21.3542
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005012054	11.7551	6.53061	sus_scrofa_wuzhishan	ENSSSCP00005045173	25	13.8889

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	84.5486	84.5486	sus_scrofa_berkshire	ENSSSCP00065007139	78.1701	78.1701
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	84.0278	84.0278	sus_scrofa	ENSSSCP00000044313	82.8767	82.8767
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	84.5486	84.5486	sus_scrofa_bamei	ENSSSCP00050005848	83.1058	83.1058
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	84.5486	84.5486	sus_scrofa_rongchang	ENSSSCP00030039183	83.1058	83.1058
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	84.5486	84.5486	sus_scrofa_landrace	ENSSSCP00045043042	78.1701	78.1701
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	84.375	84.2014	equus_caballus	ENSECAP00000010593	82.6531	82.483
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	84.5486	84.5486	sus_scrofa_meishan	ENSSSCP00040027926	78.1701	78.1701
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	84.5486	84.5486	bos_taurus	ENSBTAP00000031993	82.8231	82.8231
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	84.5486	84.5486	sus_scrofa_hampshire	ENSSSCP00035033217	78.1701	78.1701
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	84.5486	84.5486	sus_scrofa_jinhua	ENSSSCP00060016332	78.1701	78.1701
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	84.5486	84.5486	sus_scrofa_largewhite	ENSSSCP00025032259	78.1701	78.1701
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	84.5486	84.5486	sus_scrofa_pietrain	ENSSSCP00055042888	83.1058	83.1058
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	84.5486	84.5486	sus_scrofa_usmarc	ENSSSCP00070009018	78.1701	78.1701
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	84.5486	84.5486	sus_scrofa_tibetan	ENSSSCP00015040500	82.8231	82.8231
ENSSSCG00005044757	sus_scrofa_wuzhishan	ENSSSCP00005045173	81.9444	81.5972	ovis_aries_rambouillet	ENSOARP00020031004	53.7585	53.5308

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression