RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00005039480	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	5666 bases	Strand	Minus strand
Position	KQ004225.1 : 681268 - 686933	RNA binding domain	Utp13
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005039013	Utp13	PF08625	6.6e-39	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00005063121	2435	661aa	ENSSSCP00005039013

Gene Model

Click here to download ENSSSCG00005039480's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005039480's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005002391	46.0123	28.2209	sus_scrofa_wuzhishan	ENSSSCP00005039013	22.6929	13.9183

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005039013	98.6384	98.1846	sus_scrofa_berkshire	ENSSSCP00065038029	73.3408	73.0034
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005039013	96.823	96.0666	sus_scrofa	ENSSSCP00000042019	80.5031	79.8742
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005039013	98.6384	98.3359	sus_scrofa_bamei	ENSSSCP00050047419	73.3408	73.1159
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005039013	98.7897	98.4871	sus_scrofa_rongchang	ENSSSCP00030023893	75.7541	75.522
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005039013	98.6384	98.1846	sus_scrofa_landrace	ENSSSCP00045045581	73.3408	73.0034
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005039013	95.6127	90.9228	equus_caballus	ENSECAP00000071154	80	76.076
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005039013	94.8563	93.646	sus_scrofa_meishan	ENSSSCP00040035531	71.0079	70.1019
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005039013	94.8563	89.5613	bos_taurus	ENSBTAP00000060788	74.7318	70.5602
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005039013	98.6384	98.1846	sus_scrofa_hampshire	ENSSSCP00035036699	73.3408	73.0034
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005039013	98.6384	98.3359	sus_scrofa_jinhua	ENSSSCP00060048824	73.3408	73.1159
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005039013	81.0893	78.5174	sus_scrofa_largewhite	ENSSSCP00025012059	73.6264	71.2912
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005039013	98.6384	98.1846	sus_scrofa_pietrain	ENSSSCP00055049408	81.5	81.125
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005039013	98.6384	98.1846	sus_scrofa_usmarc	ENSSSCP00070046782	68.9947	68.6772
ENSSSCG00005039480	sus_scrofa_wuzhishan	ENSSSCP00005039013	95.4614	90.1664	ovis_aries_rambouillet	ENSOARP00020034413	78.2878	73.9454

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression