RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSSCG00005029978	Gene ID	100626560	Accession	-
Symbol	STAU1	Alias	-	Full Name	staufen double-stranded RNA binding protein 1
Status	Confidence	Length	57987 bases	Strand	Plus strand
Position	KQ003414.1 : 2434261 - 2492247	RNA binding domain	dsrm , Staufen_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005029582	dsrm	PF00035	4.9e-46	1
ENSSSCP00005029582	dsrm	PF00035	4.9e-46	2
ENSSSCP00005029582	dsrm	PF00035	4.9e-46	3
ENSSSCP00005029582	dsrm	PF00035	4.9e-46	4
ENSSSCP00005029582	Staufen_C	PF16482	2.3e-24	5
ENSSSCP00005029613	dsrm	PF00035	8.1e-46	1
ENSSSCP00005029613	dsrm	PF00035	8.1e-46	2
ENSSSCP00005029613	dsrm	PF00035	8.1e-46	3
ENSSSCP00005029613	dsrm	PF00035	8.1e-46	4
ENSSSCP00005029613	Staufen_C	PF16482	2.9e-57	5
ENSSSCP00005029461	dsrm	PF00035	1.1e-33	1
ENSSSCP00005029461	dsrm	PF00035	1.1e-33	2
ENSSSCP00005029461	dsrm	PF00035	1.1e-33	3
ENSSSCP00005029461	Staufen_C	PF16482	2.5e-57	4
ENSSSCP00005029543	dsrm	PF00035	2.9e-33	1
ENSSSCP00005029543	dsrm	PF00035	2.9e-33	2
ENSSSCP00005029543	dsrm	PF00035	2.9e-33	3
ENSSSCP00005029543	Staufen_C	PF16482	2.9e-57	4
ENSSSCP00005029516	dsrm	PF00035	3.2e-33	1
ENSSSCP00005029516	dsrm	PF00035	3.2e-33	2
ENSSSCP00005029516	dsrm	PF00035	3.2e-33	3
ENSSSCP00005029516	Staufen_C	PF16482	3.7e-57	4
ENSSSCP00005029653	dsrm	PF00035	1.2e-32	1
ENSSSCP00005029653	dsrm	PF00035	1.2e-32	2
ENSSSCP00005029653	Staufen_C	PF16482	4.2e-57	3
ENSSSCP00005029499	dsrm	PF00035	2.8e-30	1
ENSSSCP00005029499	dsrm	PF00035	2.8e-30	2
ENSSSCP00005029499	dsrm	PF00035	2.8e-30	3
ENSSSCP00005029499	Staufen_C	PF16482	1.8e-57	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
STAU1-201	ENSSSCT00005047877	5990	496aa	ENSSSCP00005029461
STAU1-202	ENSSSCT00005047948	3259	502aa	ENSSSCP00005029499
STAU1-205	ENSSSCT00005047974	3067	577aa	ENSSSCP00005029516
STAU1-204	ENSSSCT00005048005	3400	521aa	ENSSSCP00005029543
STAU1-203	ENSSSCT00005048060	4011	628aa	ENSSSCP00005029582
STAU1-206	ENSSSCT00005048101	3361	687aa	ENSSSCP00005029613
STAU1-207	ENSSSCT00005048153	3098	574aa	ENSSSCP00005029653

Gene Model

Click here to download ENSSSCG00005029978's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005029978's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005039862	4.52099	1.39935	sus_scrofa_wuzhishan	ENSSSCP00005029613	6.11354	1.89229
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005038365	19.4107	9.53206	sus_scrofa_wuzhishan	ENSSSCP00005029613	16.3028	8.00582
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005043601	33.8658	23.0032	sus_scrofa_wuzhishan	ENSSSCP00005029613	15.4294	10.4803
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005039183	6.56934	1.45985	sus_scrofa_wuzhishan	ENSSSCP00005029613	1.31004	0.291121
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005039141	16.3885	7.28376	sus_scrofa_wuzhishan	ENSSSCP00005029613	15.7205	6.9869
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005034213	6.10119	2.08333	sus_scrofa_wuzhishan	ENSSSCP00005029613	5.96798	2.03785
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005005580	66.561	52.6149	sus_scrofa_wuzhishan	ENSSSCP00005029613	61.1354	48.3261
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005027930	15.493	6.63984	sus_scrofa_wuzhishan	ENSSSCP00005029613	11.2082	4.80349
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005011835	30.3279	19.6721	sus_scrofa_wuzhishan	ENSSSCP00005029613	16.1572	10.4803
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005013693	19.854	11.0949	sus_scrofa_wuzhishan	ENSSSCP00005029613	19.7962	11.0626
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005007316	13.7051	5.95463	sus_scrofa_wuzhishan	ENSSSCP00005029613	21.1063	9.17031
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005015825	13.0208	5.98958	sus_scrofa_wuzhishan	ENSSSCP00005029613	7.27802	3.34789
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005006142	19.5559	10.5892	sus_scrofa_wuzhishan	ENSSSCP00005029613	33.3333	18.0495
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005006314	13.4259	5.09259	sus_scrofa_wuzhishan	ENSSSCP00005029613	4.22125	1.60116
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005005735	22.3986	13.2275	sus_scrofa_wuzhishan	ENSSSCP00005029613	18.4862	10.917

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	100	100	sus_scrofa_berkshire	ENSSSCP00065033100	100	100
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	100	100	sus_scrofa	ENSSSCP00000033939	100	100
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	100	100	sus_scrofa_bamei	ENSSSCP00050008195	100	100
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	100	100	sus_scrofa_rongchang	ENSSSCP00030001909	100	100
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	100	100	sus_scrofa_landrace	ENSSSCP00045003772	100	100
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	99.2722	98.3988	equus_caballus	ENSECAP00000034828	99.2722	98.3988
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	100	100	sus_scrofa_meishan	ENSSSCP00040044781	100	100
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	82.3872	81.8049	bos_taurus	ENSBTAP00000000301	98.0936	97.4003
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	100	100	sus_scrofa_hampshire	ENSSSCP00035011756	100	100
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	100	100	sus_scrofa_jinhua	ENSSSCP00060006493	100	100
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	100	100	sus_scrofa_largewhite	ENSSSCP00025046910	100	100
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	100	100	sus_scrofa_pietrain	ENSSSCP00055038118	100	100
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	97.671	97.671	sus_scrofa_usmarc	ENSSSCP00070028447	100	100
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	100	100	sus_scrofa_tibetan	ENSSSCP00015001568	100	100
ENSSSCG00005029978	sus_scrofa_wuzhishan	ENSSSCP00005029613	82.5328	81.6594	ovis_aries_rambouillet	ENSOARP00020030657	98.2669	97.227

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression