RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00005028367	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	38856 bases	Strand	Minus strand
Position	KQ003690.1 : 218188 - 257043	RNA binding domain	PRP1_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005028001	PRP1_N	PF06424	1.1e-36	1
ENSSSCP00005027900	PRP1_N	PF06424	2.1e-34	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00005045482	2619	872aa	ENSSSCP00005027900
-	ENSSSCT00005045628	2373	790aa	ENSSSCP00005028001

Gene Model

Click here to download ENSSSCG00005028367's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005028367's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005024885	33.7756	17.8528	sus_scrofa_wuzhishan	ENSSSCP00005027900	32.1101	16.9725
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005025230	24.1727	12.8058	sus_scrofa_wuzhishan	ENSSSCP00005027900	19.2661	10.2064

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005027900	83.3716	79.9312	sus_scrofa_berkshire	ENSSSCP00065009823	67.8172	65.0187
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005027900	83.6009	80.1606	sus_scrofa	ENSSSCP00000047344	63.3913	60.7826
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005027900	83.3716	79.9312	sus_scrofa_bamei	ENSSSCP00050043483	67.8805	65.0794
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005027900	83.3716	79.9312	sus_scrofa_rongchang	ENSSSCP00030016389	67.8805	65.0794
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005027900	83.3716	79.9312	sus_scrofa_landrace	ENSSSCP00045030900	67.8805	65.0794
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005027900	82.5688	79.4725	equus_caballus	ENSECAP00000063932	75.3927	72.5654
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005027900	83.3716	79.9312	sus_scrofa_meishan	ENSSSCP00040023750	67.8172	65.0187
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005027900	83.0275	79.5872	bos_taurus	ENSBTAP00000074220	76.9394	73.7513
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005027900	83.3716	79.9312	sus_scrofa_hampshire	ENSSSCP00035015128	67.8172	65.0187
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005027900	83.3716	79.9312	sus_scrofa_jinhua	ENSSSCP00060015764	67.8805	65.0794
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005027900	81.078	77.1789	sus_scrofa_largewhite	ENSSSCP00025043739	65.9515	62.7799
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005027900	83.3716	79.9312	sus_scrofa_pietrain	ENSSSCP00055011210	67.8805	65.0794
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005027900	83.2569	79.8165	sus_scrofa_usmarc	ENSSSCP00070015012	67.9139	65.1076
ENSSSCG00005028367	sus_scrofa_wuzhishan	ENSSSCP00005027900	83.0275	79.5872	ovis_aries_rambouillet	ENSOARP00020012507	76.9394	73.7513

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression