RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00005027086	Gene ID		Accession	-
Symbol	PTRH1	Alias	-	Full Name	Sus scrofa peptidyl-tRNA hydrolase 1 homolog (PTRH1), mRNA.
Status	Confidence	Length	1802 bases	Strand	Minus strand
Position	KQ003822.1 : 4623231 - 4625032	RNA binding domain	Pept_tRNA_hydro
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005026321	Pept_tRNA_hydro	PF01195	3.9e-46	1
ENSSSCP00005026342	Pept_tRNA_hydro	PF01195	3.2e-23	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PTRH1-201	ENSSSCT00005042959	946	214aa	ENSSSCP00005026321
PTRH1-202	ENSSSCT00005042991	534	178aa	ENSSSCP00005026342

Gene Model

Click here to download ENSSSCG00005027086's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005027086's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005027086

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	78.5047	77.5701	sus_scrofa_berkshire	ENSSSCP00065046859	70.8861	70.0422
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	99.0654	99.0654	sus_scrofa	ENSSSCP00000006016	99.0654	99.0654
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	99.5327	99.5327	sus_scrofa_bamei	ENSSSCP00050008180	99.5327	99.5327
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	78.5047	77.5701	sus_scrofa_rongchang	ENSSSCP00030047705	70.8861	70.0422
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	78.5047	77.5701	sus_scrofa_landrace	ENSSSCP00045011558	70.8861	70.0422
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	92.5234	90.1869	equus_caballus	ENSECAP00000075123	72.7941	70.9559
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	99.0654	99.0654	sus_scrofa_meishan	ENSSSCP00040027457	99.0654	99.0654
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	72.4299	69.6262	bos_taurus	ENSBTAP00000016930	54.9645	52.8369
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	99.0654	99.0654	sus_scrofa_hampshire	ENSSSCP00035016934	99.0654	99.0654
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	99.0654	99.0654	sus_scrofa_jinhua	ENSSSCP00060000743	99.0654	99.0654
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	78.5047	77.5701	sus_scrofa_largewhite	ENSSSCP00025027843	70.8861	70.0422
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	99.0654	99.0654	sus_scrofa_pietrain	ENSSSCP00055030874	99.0654	99.0654
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	99.0654	99.0654	sus_scrofa_usmarc	ENSSSCP00070023999	99.0654	99.0654
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	78.5047	77.5701	sus_scrofa_tibetan	ENSSSCP00015012351	70.8861	70.0422
ENSSSCG00005027086	sus_scrofa_wuzhishan	ENSSSCP00005026321	92.5234	88.785	ovis_aries_rambouillet	ENSOARP00020022166	92.5234	88.785

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression