RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00005024709	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	85151 bases	Strand	Plus strand
Position	KQ004196.1 : 1817894 - 1903044	RNA binding domain	zf-CCCH , RRM_1 , PWI
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005024454	zf-CCCH	PF00642	0.00041	1
ENSSSCP00005024454	RRM_1	PF00076	0.00024	2
ENSSSCP00005024454	PWI	PF01480	0.00012	3
ENSSSCP00005024521	RRM_1	PF00076	0.00024	1
ENSSSCP00005024521	PWI	PF01480	6.8e-05	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00005039916	2886	961aa	ENSSSCP00005024454
-	ENSSSCT00005040068	2889	962aa	ENSSSCP00005024521

Gene Model

Click here to download ENSSSCG00005024709's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005024709's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005028805	58.8469	43.837	sus_scrofa_wuzhishan	ENSSSCP00005024521	61.5385	45.842

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	99.0644	98.7526	sus_scrofa_berkshire	ENSSSCP00065045191	89.7363	89.4539
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	99.1684	98.8566	sus_scrofa	ENSSSCP00000015337	99.1684	98.8566
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	99.0644	98.7526	sus_scrofa_bamei	ENSSSCP00050015807	89.7363	89.4539
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	99.0644	98.7526	sus_scrofa_rongchang	ENSSSCP00030042922	89.7363	89.4539
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	99.0644	98.7526	sus_scrofa_landrace	ENSSSCP00045040167	89.7363	89.4539
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	98.2328	97.2973	equus_caballus	ENSECAP00000028901	87.4191	86.5865
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	99.0644	98.7526	sus_scrofa_meishan	ENSSSCP00040000413	89.7363	89.4539
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	98.4408	97.0894	bos_taurus	ENSBTAP00000015463	89.5085	88.2798
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	99.0644	98.7526	sus_scrofa_hampshire	ENSSSCP00035003177	89.7363	89.4539
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	99.0644	98.7526	sus_scrofa_jinhua	ENSSSCP00060016129	89.7363	89.4539
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	99.0644	98.7526	sus_scrofa_largewhite	ENSSSCP00025026195	89.7363	89.4539
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	99.0644	98.7526	sus_scrofa_pietrain	ENSSSCP00055045576	89.7363	89.4539
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	99.0644	98.7526	sus_scrofa_usmarc	ENSSSCP00070007155	89.8209	89.5382
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	99.0644	98.7526	sus_scrofa_tibetan	ENSSSCP00015014195	89.7363	89.4539
ENSSSCG00005024709	sus_scrofa_wuzhishan	ENSSSCP00005024521	98.4408	97.1933	ovis_aries_rambouillet	ENSOARP00020026255	89.5085	88.3743

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression