Description

Ensembl ID ENSSSCG00005024311 Gene ID 768100 Accession -
Symbol PTBP3 Alias - Full Name polypyrimidine tract binding protein 3
Status Confidence Length 102954 bases Strand Minus strand
Position KQ002350.1 : 496560 - 599513 RNA binding domain RRM_5 , RRM_8 , RRM_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00005024724 RRM_5 PF13893 1.4e-61 1
ENSSSCP00005024724 RRM_5 PF13893 1.4e-61 2
ENSSSCP00005024724 RRM_5 PF13893 1.4e-61 3
ENSSSCP00005024724 RRM_8 PF11835 1.2e-14 4
ENSSSCP00005024724 RRM_1 PF00076 1.1e-29 5
ENSSSCP00005024724 RRM_1 PF00076 1.1e-29 6
ENSSSCP00005024724 RRM_1 PF00076 1.1e-29 7
ENSSSCP00005024783 RRM_5 PF13893 1.6e-60 1
ENSSSCP00005024783 RRM_5 PF13893 1.6e-60 2
ENSSSCP00005024783 RRM_5 PF13893 1.6e-60 3
ENSSSCP00005024783 RRM_8 PF11835 7.1e-15 4
ENSSSCP00005024783 RRM_1 PF00076 1.3e-26 5
ENSSSCP00005024783 RRM_1 PF00076 1.3e-26 6
ENSSSCP00005024783 RRM_1 PF00076 1.3e-26 7
ENSSSCP00005024747 RRM_5 PF13893 3.1e-59 1
ENSSSCP00005024747 RRM_5 PF13893 3.1e-59 2
ENSSSCP00005024747 RRM_5 PF13893 3.1e-59 3
ENSSSCP00005024747 RRM_8 PF11835 1.7e-14 4
ENSSSCP00005024747 RRM_1 PF00076 4.6e-27 5
ENSSSCP00005024747 RRM_1 PF00076 4.6e-27 6
ENSSSCP00005024874 RRM_5 PF13893 4.6e-50 1
ENSSSCP00005024874 RRM_5 PF13893 4.6e-50 2
ENSSSCP00005024874 RRM_5 PF13893 4.6e-50 3
ENSSSCP00005024874 RRM_8 PF11835 1.9e-14 4
ENSSSCP00005024874 RRM_1 PF00076 1.4e-25 5
ENSSSCP00005024874 RRM_1 PF00076 1.4e-25 6
ENSSSCP00005024839 RRM_5 PF13893 5.7e-50 1
ENSSSCP00005024839 RRM_5 PF13893 5.7e-50 2
ENSSSCP00005024839 RRM_5 PF13893 5.7e-50 3
ENSSSCP00005024839 RRM_8 PF11835 2e-14 4
ENSSSCP00005024839 RRM_1 PF00076 1.7e-25 5
ENSSSCP00005024839 RRM_1 PF00076 1.7e-25 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
PTBP3-201 ENSSSCT00005040410 6592 526aa ENSSSCP00005024724
PTBP3-202 ENSSSCT00005040444 6167 496aa ENSSSCP00005024747
PTBP3-203 ENSSSCT00005040488 5693 428aa ENSSSCP00005024783
PTBP3-205 ENSSSCT00005040590 1602 533aa ENSSSCP00005024839
PTBP3-204 ENSSSCT00005040654 1557 518aa ENSSSCP00005024874

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000500848881.005667.784sus_scrofa_wuzhishanENSSSCP0000502483981.613568.2927
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000503665937.848621.7131sus_scrofa_wuzhishanENSSSCP0000502483935.647320.4503
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000504517336.284721.0069sus_scrofa_wuzhishanENSSSCP0000502483939.21222.7017
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000501867578.207469.2443sus_scrofa_wuzhishanENSSSCP0000502483983.489773.9212
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000501205415.34698.2449sus_scrofa_wuzhishanENSSSCP0000502483935.27218.9493

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483999.812499.6248sus_scrofa_berkshireENSSSCP0006501877695.511795.3321
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483999.812499.6248sus_scrofaENSSSCP0000000586395.511795.3321
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483999.812499.6248sus_scrofa_bameiENSSSCP0005004334195.511795.3321
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483999.812499.6248sus_scrofa_rongchangENSSSCP0003000969395.511795.3321
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483999.812499.6248sus_scrofa_landraceENSSSCP0004504089695.511795.3321
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483993.433491.3696equus_caballusENSECAP0000004224362.327960.9512
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483999.812499.6248sus_scrofa_meishanENSSSCP0004003233095.511795.3321
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483998.874397.7486bos_taurusENSBTAP0000005735394.784293.705
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483999.812499.6248sus_scrofa_hampshireENSSSCP0003501158095.511795.3321
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483999.812499.6248sus_scrofa_jinhuaENSSSCP0006003286995.511795.3321
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483999.812499.6248sus_scrofa_largewhiteENSSSCP0002503519395.511795.3321
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483993.058290.0563sus_scrofa_pietrainENSSSCP0005501502189.208686.3309
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483999.812499.6248sus_scrofa_usmarcENSSSCP0007003687395.511795.3321
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483999.812499.6248sus_scrofa_tibetanENSSSCP0001501343895.511795.3321
ENSSSCG00005024311sus_scrofa_wuzhishanENSSSCP0000502483996.622994.5591ovis_aries_rambouilletENSOARP0002002833560.375159.0856

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression