RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00005024155	Gene ID		Accession	-
Symbol	MKRN1	Alias	-	Full Name	NA
Status	Confidence	Length	14903 bases	Strand	Plus strand
Position	KQ004175.1 : 1667906 - 1682808	RNA binding domain	zf-CCCH , zf-CCCH_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005023534	zf-CCCH	PF00642	2.4e-16	1
ENSSSCP00005023534	zf-CCCH	PF00642	2.4e-16	2
ENSSSCP00005023534	zf-CCCH_2	PF14608	3.3e-11	3
ENSSSCP00005023534	zf-CCCH_2	PF14608	3.3e-11	4
ENSSSCP00005023534	zf-CCCH_2	PF14608	3.3e-11	5
ENSSSCP00005023534	zf-CCCH_2	PF14608	3.3e-11	6

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MKRN1-201	ENSSSCT00005038355	1257	418aa	ENSSSCP00005023534

Gene Model

Click here to download ENSSSCG00005024155's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005024155's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005028729	55.9165	44.5476	sus_scrofa_wuzhishan	ENSSSCP00005023534	57.6555	45.933
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005027180	56.9087	41.2178	sus_scrofa_wuzhishan	ENSSSCP00005023534	58.134	42.1053

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	100	100	sus_scrofa_berkshire	ENSSSCP00065027464	86.722	86.722
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	100	100	sus_scrofa	ENSSSCP00000047334	86.722	86.722
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	100	100	sus_scrofa_bamei	ENSSSCP00050031620	86.722	86.722
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	100	100	sus_scrofa_rongchang	ENSSSCP00030011033	86.722	86.722
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	100	100	sus_scrofa_landrace	ENSSSCP00045032940	86.722	86.722
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	98.8038	96.89	equus_caballus	ENSECAP00000015649	82.1074	80.5169
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	100	100	sus_scrofa_meishan	ENSSSCP00040024153	86.722	86.722
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	97.6077	95.2153	bos_taurus	ENSBTAP00000010932	82.7586	80.7302
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	100	100	sus_scrofa_hampshire	ENSSSCP00035028782	86.722	86.722
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	100	99.7608	sus_scrofa_jinhua	ENSSSCP00060001212	86.722	86.5145
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	100	100	sus_scrofa_largewhite	ENSSSCP00025015983	86.722	86.722
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	100	100	sus_scrofa_pietrain	ENSSSCP00055031811	86.722	86.722
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	100	100	sus_scrofa_usmarc	ENSSSCP00070037197	86.722	86.722
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	100	100	sus_scrofa_tibetan	ENSSSCP00015001986	86.722	86.722
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	96.89	94.4976	ovis_aries_rambouillet	ENSOARP00020006668	84.375	82.2917
ENSSSCG00005024155	sus_scrofa_wuzhishan	ENSSSCP00005023534	48.5646	44.2584	ovis_aries_rambouillet	ENSOARP00020015585	82.1862	74.8988

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression