RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00005023865	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	58073 bases	Strand	Plus strand
Position	KQ003604.1 : 6403159 - 6461231	RNA binding domain	PWI
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005024332	PWI	PF01480	3.9e-29	1
ENSSSCP00005024568	PWI	PF01480	4e-29	1
ENSSSCP00005024599	PWI	PF01480	3.2e-08	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00005039712	2784	927aa	ENSSSCP00005024332
-	ENSSSCT00005040164	2736	911aa	ENSSSCP00005024568
-	ENSSSCT00005040204	2848	769aa	ENSSSCP00005024599

Gene Model

Click here to download ENSSSCG00005023865's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005023865's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005023865

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	98.4898	97.9504	sus_scrofa_berkshire	ENSSSCP00065001411	94.3182	93.8017
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	98.4898	97.9504	sus_scrofa	ENSSSCP00000047802	94.3182	93.8017
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	98.3819	97.8425	sus_scrofa_bamei	ENSSSCP00050036208	94.2149	93.6983
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	98.3819	97.8425	sus_scrofa_rongchang	ENSSSCP00030034447	94.2149	93.6983
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	98.4898	97.9504	sus_scrofa_landrace	ENSSSCP00045047848	94.3182	93.8017
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	91.4779	89.9676	equus_caballus	ENSECAP00000042414	91.6757	90.1622
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	98.274	97.7346	sus_scrofa_meishan	ENSSSCP00040046105	94.2089	93.6918
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	91.2621	90.2913	bos_taurus	ENSBTAP00000071447	92.459	91.4754
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	98.3819	97.8425	sus_scrofa_hampshire	ENSSSCP00035046698	94.2149	93.6983
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	98.3819	97.8425	sus_scrofa_jinhua	ENSSSCP00060007888	94.2149	93.6983
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	98.3819	97.8425	sus_scrofa_largewhite	ENSSSCP00025010983	94.2149	93.6983
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	98.4898	97.9504	sus_scrofa_pietrain	ENSSSCP00055032600	94.3182	93.8017
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	98.3819	97.8425	sus_scrofa_usmarc	ENSSSCP00070045926	94.2149	93.6983
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	98.4898	97.9504	sus_scrofa_tibetan	ENSSSCP00015031818	94.3182	93.8017
ENSSSCG00005023865	sus_scrofa_wuzhishan	ENSSSCP00005024332	91.0464	90.0755	ovis_aries_rambouillet	ENSOARP00020012695	92.2404	91.2568

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression