RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00005023564	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	107924 bases	Strand	Plus strand
Position	KQ003771.1 : 450805 - 558728	RNA binding domain	SH3_12 , XRN_N , XRN1_D1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005022912	SH3_12	PF18129	3.4e-19	1
ENSSSCP00005022912	XRN_N	PF03159	1.3e-93	2
ENSSSCP00005022912	XRN1_D1	PF18332	4.9e-32	3
ENSSSCP00005022944	SH3_12	PF18129	4.4e-08	1
ENSSSCP00005022944	XRN_N	PF03159	1.4e-93	2
ENSSSCP00005022944	XRN1_D1	PF18332	5.1e-32	3
ENSSSCP00005022879	SH3_12	PF18129	4.5e-08	1
ENSSSCP00005022879	XRN_N	PF03159	1.4e-93	2
ENSSSCP00005022879	XRN1_D1	PF18332	5.2e-32	3
ENSSSCP00005022837	XRN_N	PF03159	6.7e-95	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00005037331	3574	463aa	ENSSSCP00005022837
-	ENSSSCT00005037392	8034	1639aa	ENSSSCP00005022879
-	ENSSSCT00005037443	8434	1565aa	ENSSSCP00005022912
-	ENSSSCT00005037483	7958	1627aa	ENSSSCP00005022944

Gene Model

Click here to download ENSSSCG00005023564's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005023564's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005023100	52.2946	35.539	sus_scrofa_wuzhishan	ENSSSCP00005022879	29.8963	20.3173

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	99.817	99.817	sus_scrofa_berkshire	ENSSSCP00065007265	93.5392	93.5392
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	99.756	99.756	sus_scrofa	ENSSSCP00000067024	96.007	96.007
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	99.939	99.939	sus_scrofa_bamei	ENSSSCP00050010043	93.6535	93.6535
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	99.878	99.878	sus_scrofa_rongchang	ENSSSCP00030008560	93.5963	93.5963
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	99.878	99.878	sus_scrofa_landrace	ENSSSCP00045023506	93.5963	93.5963
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	95.6071	92.4954	equus_caballus	ENSECAP00000052827	92.503	89.4923
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	99.817	99.756	sus_scrofa_meishan	ENSSSCP00040003153	98.3764	98.3163
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	97.6815	95.363	bos_taurus	ENSBTAP00000015318	94.0106	91.7792
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	99.817	99.817	sus_scrofa_hampshire	ENSSSCP00035007668	93.5392	93.5392
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	99.817	99.756	sus_scrofa_jinhua	ENSSSCP00060006269	93.5392	93.482
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	99.817	99.817	sus_scrofa_largewhite	ENSSSCP00025040569	93.5392	93.5392
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	99.817	99.817	sus_scrofa_pietrain	ENSSSCP00055031659	93.5392	93.5392
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	99.0238	99.0238	sus_scrofa_usmarc	ENSSSCP00070012062	93.8693	93.8693
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	87.8585	87.7974	sus_scrofa_tibetan	ENSSSCP00015012050	92.0128	91.9489
ENSSSCG00005023564	sus_scrofa_wuzhishan	ENSSSCP00005022879	97.6205	95.6071	ovis_aries_rambouillet	ENSOARP00020009210	92.0069	90.1093

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression