RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	ENSSSCG00005023166	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	53423 bases	Strand	Plus strand
Position	KQ004121.1 : 511713 - 565135	RNA binding domain	zf-CCCH , zf-CCCH_2
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005022383	zf-CCCH	PF00642	4.9e-12	1
ENSSSCP00005022383	zf-CCCH	PF00642	4.9e-12	2
ENSSSCP00005022383	zf-CCCH_2	PF14608	2.4e-09	3
ENSSSCP00005022383	zf-CCCH_2	PF14608	2.4e-09	4
ENSSSCP00005022383	zf-CCCH_2	PF14608	2.4e-09	5
ENSSSCP00005022396	zf-CCCH	PF00642	4.8e-12	1
ENSSSCP00005022396	zf-CCCH	PF00642	4.8e-12	2
ENSSSCP00005022396	zf-CCCH_2	PF14608	2.4e-09	3
ENSSSCP00005022396	zf-CCCH_2	PF14608	2.4e-09	4
ENSSSCP00005022396	zf-CCCH_2	PF14608	2.4e-09	5
ENSSSCP00005022410	zf-CCCH	PF00642	4.8e-12	1
ENSSSCP00005022410	zf-CCCH	PF00642	4.8e-12	2
ENSSSCP00005022410	zf-CCCH_2	PF14608	2.4e-09	3
ENSSSCP00005022410	zf-CCCH_2	PF14608	2.4e-09	4
ENSSSCP00005022410	zf-CCCH_2	PF14608	2.4e-09	5

Showing 1 to 15 of 15 entries

Transcripts

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Search:

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00005036641	2196	309aa	ENSSSCP00005022383
-	ENSSSCT00005036663	1573	308aa	ENSSSCP00005022396
-	ENSSSCT00005036692	4124	308aa	ENSSSCP00005022410

Showing 1 to 3 of 3 entries

Gene Model

Click here to download ENSSSCG00005023166's gene model file

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005023166's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022331	16.4835	11.7498	sus_scrofa_wuzhishan	ENSSSCP00005022383	63.1068	44.9838
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005010456	14.4076	9.00474	sus_scrofa_wuzhishan	ENSSSCP00005022383	49.1909	30.7443

Showing 1 to 2 of 2 entries

Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	96.4401	95.7929	sus_scrofa_berkshire	ENSSSCP00065036875	96.7533	96.1039
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	100	100	sus_scrofa	ENSSSCP00000057275	100	100
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	96.7638	96.1165	sus_scrofa_bamei	ENSSSCP00050046100	97.0779	96.4286
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	100	100	sus_scrofa_rongchang	ENSSSCP00030040613	100	100
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	96.7638	96.1165	sus_scrofa_landrace	ENSSSCP00045022825	97.0779	96.4286
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	88.0259	82.8479	equus_caballus	ENSECAP00000020190	88.8889	83.6601
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	100	100	sus_scrofa_meishan	ENSSSCP00040034503	100	100
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	88.3495	80.9062	bos_taurus	ENSBTAP00000021230	89.8026	82.2368
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	100	100	sus_scrofa_hampshire	ENSSSCP00035012830	100	100
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	96.7638	96.1165	sus_scrofa_jinhua	ENSSSCP00060033824	97.0779	96.4286

Showing 1 to 10 of 15 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs