RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00005023166	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	53423 bases	Strand	Plus strand
Position	KQ004121.1 : 511713 - 565135	RNA binding domain	zf-CCCH , zf-CCCH_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005022396	zf-CCCH	PF00642	4.8e-12	1
ENSSSCP00005022396	zf-CCCH	PF00642	4.8e-12	2
ENSSSCP00005022396	zf-CCCH_2	PF14608	2.4e-09	3
ENSSSCP00005022396	zf-CCCH_2	PF14608	2.4e-09	4
ENSSSCP00005022396	zf-CCCH_2	PF14608	2.4e-09	5
ENSSSCP00005022410	zf-CCCH	PF00642	4.8e-12	1
ENSSSCP00005022410	zf-CCCH	PF00642	4.8e-12	2
ENSSSCP00005022410	zf-CCCH_2	PF14608	2.4e-09	3
ENSSSCP00005022410	zf-CCCH_2	PF14608	2.4e-09	4
ENSSSCP00005022410	zf-CCCH_2	PF14608	2.4e-09	5
ENSSSCP00005022383	zf-CCCH	PF00642	4.9e-12	1
ENSSSCP00005022383	zf-CCCH	PF00642	4.9e-12	2
ENSSSCP00005022383	zf-CCCH_2	PF14608	2.4e-09	3
ENSSSCP00005022383	zf-CCCH_2	PF14608	2.4e-09	4
ENSSSCP00005022383	zf-CCCH_2	PF14608	2.4e-09	5

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00005036641	2196	309aa	ENSSSCP00005022383
-	ENSSSCT00005036663	1573	308aa	ENSSSCP00005022396
-	ENSSSCT00005036692	4124	308aa	ENSSSCP00005022410

Gene Model

Click here to download ENSSSCG00005023166's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005023166's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022331	16.4835	11.7498	sus_scrofa_wuzhishan	ENSSSCP00005022383	63.1068	44.9838
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005010456	14.4076	9.00474	sus_scrofa_wuzhishan	ENSSSCP00005022383	49.1909	30.7443

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	96.4401	95.7929	sus_scrofa_berkshire	ENSSSCP00065036875	96.7533	96.1039
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	100	100	sus_scrofa	ENSSSCP00000057275	100	100
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	96.7638	96.1165	sus_scrofa_bamei	ENSSSCP00050046100	97.0779	96.4286
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	100	100	sus_scrofa_rongchang	ENSSSCP00030040613	100	100
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	96.7638	96.1165	sus_scrofa_landrace	ENSSSCP00045022825	97.0779	96.4286
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	88.0259	82.8479	equus_caballus	ENSECAP00000020190	88.8889	83.6601
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	100	100	sus_scrofa_meishan	ENSSSCP00040034503	100	100
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	88.3495	80.9062	bos_taurus	ENSBTAP00000021230	89.8026	82.2368
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	100	100	sus_scrofa_hampshire	ENSSSCP00035012830	100	100
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	96.7638	96.1165	sus_scrofa_jinhua	ENSSSCP00060033824	97.0779	96.4286
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	96.7638	96.1165	sus_scrofa_largewhite	ENSSSCP00025001913	97.0779	96.4286
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	100	100	sus_scrofa_pietrain	ENSSSCP00055009579	100	100
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	96.4401	95.7929	sus_scrofa_usmarc	ENSSSCP00070039209	96.7533	96.1039
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	100	99.6764	sus_scrofa_tibetan	ENSSSCP00015035793	100	99.6764
ENSSSCG00005023166	sus_scrofa_wuzhishan	ENSSSCP00005022383	88.6731	81.877	ovis_aries_rambouillet	ENSOARP00020002484	86.9841	80.3175

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression