Description

Ensembl ID ENSSSCG00005023001 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 94989 bases Strand Minus strand
Position KQ004121.1 : 416685 - 511673 RNA binding domain zf-CCCH , zf-CCCH_2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00005022226 zf-CCCH PF00642 2.6e-11 1
ENSSSCP00005022226 zf-CCCH PF00642 2.6e-11 2
ENSSSCP00005022226 zf-CCCH_2 PF14608 2.9e-11 3
ENSSSCP00005022226 zf-CCCH_2 PF14608 2.9e-11 4
ENSSSCP00005022226 zf-CCCH_2 PF14608 2.9e-11 5
ENSSSCP00005022264 zf-CCCH PF00642 2.9e-11 1
ENSSSCP00005022264 zf-CCCH PF00642 2.9e-11 2
ENSSSCP00005022264 zf-CCCH_2 PF14608 3.1e-11 3
ENSSSCP00005022264 zf-CCCH_2 PF14608 3.1e-11 4
ENSSSCP00005022264 zf-CCCH_2 PF14608 3.1e-11 5
ENSSSCP00005022331 zf-CCCH PF00642 2.9e-11 1
ENSSSCP00005022331 zf-CCCH PF00642 2.9e-11 2
ENSSSCP00005022331 zf-CCCH_2 PF14608 3.1e-11 3
ENSSSCP00005022331 zf-CCCH_2 PF14608 3.1e-11 4
ENSSSCP00005022331 zf-CCCH_2 PF14608 3.1e-11 5

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00005036388 3862 1151aa ENSSSCP00005022226
- ENSSSCT00005036448 3952 1181aa ENSSSCP00005022264
- ENSSSCT00005036555 3552 1183aa ENSSSCP00005022331

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502238363.106844.9838sus_scrofa_wuzhishanENSSSCP0000502233116.483511.7498
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000501045646.635133.8389sus_scrofa_wuzhishanENSSSCP0000502233141.589230.1775

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233196.02796.027sus_scrofa_berkshireENSSSCP0006503709398.954798.9547
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233198.985698.9856sus_scrofaENSSSCP0000004858398.985698.9856
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233196.111696.1116sus_scrofa_bameiENSSSCP0005004610799.041899.0418
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233199.070299.0702sus_scrofa_rongchangENSSSCP0003004054399.070299.0702
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233196.02796.027sus_scrofa_landraceENSSSCP0004502308598.954798.9547
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233191.969689.1801equus_caballusENSECAP0000008040890.591287.8435
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233199.070299.0702sus_scrofa_meishanENSSSCP0004003438399.070299.0702
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233115.722714.962bos_taurusENSBTAP0000002751491.176586.7647
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233198.985698.9856sus_scrofa_hampshireENSSSCP0003501265198.985698.9856
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233196.111696.1116sus_scrofa_jinhuaENSSSCP0006003391199.041899.0418
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233196.02796.027sus_scrofa_largewhiteENSSSCP0002500196098.954798.9547
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233198.901198.9011sus_scrofa_pietrainENSSSCP0005500942198.901198.9011
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233198.985698.9856sus_scrofa_usmarcENSSSCP0007003884098.985698.9856
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233190.27989.5182sus_scrofa_tibetanENSSSCP0001503571796.129695.3195
ENSSSCG00005023001sus_scrofa_wuzhishanENSSSCP0000502233189.602785.5452ovis_aries_rambouilletENSOARP0002000252490.598386.4957

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression