Description

Ensembl ID ENSSSCG00005019127 Gene ID 397461 Accession -
Symbol PTBP1 Alias - Full Name polypyrimidine tract binding protein 1
Status Confidence Length 13829 bases Strand Minus strand
Position KQ003477.1 : 5550581 - 5564409 RNA binding domain RRM_5 , RRM_8 , RRM_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00005018702 RRM_5 PF13893 3.8e-66 1
ENSSSCP00005018702 RRM_5 PF13893 3.8e-66 2
ENSSSCP00005018702 RRM_5 PF13893 3.8e-66 3
ENSSSCP00005018702 RRM_5 PF13893 3.8e-66 4
ENSSSCP00005018702 RRM_8 PF11835 1.2e-14 5
ENSSSCP00005018702 RRM_1 PF00076 2.5e-37 6
ENSSSCP00005018702 RRM_1 PF00076 2.5e-37 7
ENSSSCP00005018702 RRM_1 PF00076 2.5e-37 8
ENSSSCP00005018822 RRM_5 PF13893 3.8e-66 1
ENSSSCP00005018822 RRM_5 PF13893 3.8e-66 2
ENSSSCP00005018822 RRM_5 PF13893 3.8e-66 3
ENSSSCP00005018822 RRM_5 PF13893 3.8e-66 4
ENSSSCP00005018822 RRM_8 PF11835 1.2e-14 5
ENSSSCP00005018822 RRM_1 PF00076 2.5e-37 6
ENSSSCP00005018822 RRM_1 PF00076 2.5e-37 7
ENSSSCP00005018822 RRM_1 PF00076 2.5e-37 8
ENSSSCP00005018717 RRM_5 PF13893 4.3e-66 1
ENSSSCP00005018717 RRM_5 PF13893 4.3e-66 2
ENSSSCP00005018717 RRM_5 PF13893 4.3e-66 3
ENSSSCP00005018717 RRM_5 PF13893 4.3e-66 4
ENSSSCP00005018717 RRM_8 PF11835 1.2e-14 5
ENSSSCP00005018717 RRM_1 PF00076 2.6e-37 6
ENSSSCP00005018717 RRM_1 PF00076 2.6e-37 7
ENSSSCP00005018717 RRM_1 PF00076 2.6e-37 8
ENSSSCP00005018651 RRM_5 PF13893 5.2e-66 1
ENSSSCP00005018651 RRM_5 PF13893 5.2e-66 2
ENSSSCP00005018651 RRM_5 PF13893 5.2e-66 3
ENSSSCP00005018651 RRM_5 PF13893 5.2e-66 4
ENSSSCP00005018651 RRM_8 PF11835 1.3e-14 5
ENSSSCP00005018651 RRM_1 PF00076 3.5e-37 6
ENSSSCP00005018651 RRM_1 PF00076 3.5e-37 7
ENSSSCP00005018651 RRM_1 PF00076 3.5e-37 8
ENSSSCP00005018675 RRM_5 PF13893 6e-66 1
ENSSSCP00005018675 RRM_5 PF13893 6e-66 2
ENSSSCP00005018675 RRM_5 PF13893 6e-66 3
ENSSSCP00005018675 RRM_5 PF13893 6e-66 4
ENSSSCP00005018675 RRM_8 PF11835 1.4e-14 5
ENSSSCP00005018675 RRM_1 PF00076 4e-37 6
ENSSSCP00005018675 RRM_1 PF00076 4e-37 7
ENSSSCP00005018675 RRM_1 PF00076 4e-37 8
ENSSSCP00005019060 RRM_5 PF13893 7.3e-54 1
ENSSSCP00005019060 RRM_5 PF13893 7.3e-54 2
ENSSSCP00005019060 RRM_5 PF13893 7.3e-54 3
ENSSSCP00005019060 RRM_5 PF13893 7.3e-54 4
ENSSSCP00005019060 RRM_8 PF11835 4.8e-14 5
ENSSSCP00005019060 RRM_1 PF00076 1.1e-31 6
ENSSSCP00005019060 RRM_1 PF00076 1.1e-31 7
ENSSSCP00005019037 RRM_5 PF13893 7.4e-54 1
ENSSSCP00005019037 RRM_5 PF13893 7.4e-54 2
ENSSSCP00005019037 RRM_5 PF13893 7.4e-54 3
ENSSSCP00005019037 RRM_5 PF13893 7.4e-54 4
ENSSSCP00005019037 RRM_8 PF11835 4.8e-14 5
ENSSSCP00005019037 RRM_1 PF00076 1.1e-31 6
ENSSSCP00005019037 RRM_1 PF00076 1.1e-31 7
ENSSSCP00005018807 RRM_5 PF13893 2.7e-48 1
ENSSSCP00005018807 RRM_5 PF13893 2.7e-48 2
ENSSSCP00005018807 RRM_5 PF13893 2.7e-48 3
ENSSSCP00005018807 RRM_5 PF13893 2.7e-48 4
ENSSSCP00005018807 RRM_5 PF13893 2.7e-48 5
ENSSSCP00005018807 RRM_8 PF11835 5.8e-14 6
ENSSSCP00005018807 RRM_1 PF00076 9.4e-30 7
ENSSSCP00005018807 RRM_1 PF00076 9.4e-30 8
ENSSSCP00005018959 RRM_5 PF13893 4.9e-45 1
ENSSSCP00005018959 RRM_5 PF13893 4.9e-45 2
ENSSSCP00005018959 RRM_1 PF00076 7.8e-17 3
ENSSSCP00005018959 RRM_1 PF00076 7.8e-17 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
PTBP1-202 ENSSSCT00005030544 5198 557aa ENSSSCP00005018651
PTBP1-201 ENSSSCT00005030586 5234 569aa ENSSSCP00005018675
PTBP1-203 ENSSSCT00005030636 3139 527aa ENSSSCP00005018702
PTBP1-204 ENSSSCT00005030662 3113 531aa ENSSSCP00005018717
PTBP1-205 ENSSSCT00005030844 3073 539aa ENSSSCP00005018807
PTBP1-206 ENSSSCT00005030871 3128 527aa ENSSSCP00005018822
PTBP1-209 ENSSSCT00005031089 594 197aa ENSSSCP00005018959
PTBP1-208 ENSSSCT00005031252 1638 545aa ENSSSCP00005019037
PTBP1-207 ENSSSCT00005031291 1632 543aa ENSSSCP00005019060

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00005019127sus_scrofa_wuzhishanENSSSCP0000502483983.489773.9212sus_scrofa_wuzhishanENSSSCP0000501867578.207469.2443
ENSSSCG00005019127sus_scrofa_wuzhishanENSSSCP0000503665941.035922.51sus_scrofa_wuzhishanENSSSCP0000501867536.203919.8594
ENSSSCG00005019127sus_scrofa_wuzhishanENSSSCP0000500848883.240271.5084sus_scrofa_wuzhishanENSSSCP0000501867578.558967.4868
ENSSSCG00005019127sus_scrofa_wuzhishanENSSSCP0000504517337.847221.3542sus_scrofa_wuzhishanENSSSCP0000501867538.312821.6169
ENSSSCG00005019127sus_scrofa_wuzhishanENSSSCP0000501205415.75518.81633sus_scrofa_wuzhishanENSSSCP0000501867533.919218.9807

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00005019127

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression