RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00005017870	Gene ID		Accession	-
Symbol	RAMAC	Alias	-	Full Name	NA
Status	Confidence	Length	5527 bases	Strand	Plus strand
Position	KQ003426.1 : 2216565 - 2222091	RNA binding domain	RAM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005017242	RAM	PF15320	6.2e-26	1
ENSSSCP00005017251	RAM	PF15320	6.2e-26	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RAMAC-201	ENSSSCT00005028232	813	118aa	ENSSSCP00005017242
RAMAC-202	ENSSSCT00005028252	595	118aa	ENSSSCP00005017251

Gene Model

Click here to download ENSSSCG00005017870's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005017870's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005017870

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	100	100	sus_scrofa_berkshire	ENSSSCP00065023802	100	100
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	100	100	sus_scrofa	ENSSSCP00000047252	100	100
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	100	100	sus_scrofa_bamei	ENSSSCP00050042808	100	100
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	100	100	sus_scrofa_rongchang	ENSSSCP00030041076	100	100
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	100	100	sus_scrofa_landrace	ENSSSCP00045003615	100	100
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	57.6271	53.3898	equus_caballus	ENSECAP00000072992	63.5514	58.8785
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	100	100	sus_scrofa_meishan	ENSSSCP00040000124	100	100
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	97.4576	92.3729	bos_taurus	ENSBTAP00000038589	97.4576	92.3729
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	100	100	sus_scrofa_hampshire	ENSSSCP00035040378	100	100
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	100	100	sus_scrofa_jinhua	ENSSSCP00060009366	95.935	95.935
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	100	100	sus_scrofa_largewhite	ENSSSCP00025044267	100	100
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	100	100	sus_scrofa_pietrain	ENSSSCP00055030285	100	100
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	100	100	sus_scrofa_usmarc	ENSSSCP00070030100	100	100
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	100	100	sus_scrofa_tibetan	ENSSSCP00015015037	100	100
ENSSSCG00005017870	sus_scrofa_wuzhishan	ENSSSCP00005017242	96.6102	93.2203	ovis_aries_rambouillet	ENSOARP00020026587	96.6102	93.2203

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression