RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00005015635	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	2098 bases	Strand	Minus strand
Position	AJKK01171741.1 : 1603 - 3700	RNA binding domain	tRNA-synt_1c , tRNA-synt_1c_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005014731	tRNA-synt_1c	PF00749	9.6e-109	1
ENSSSCP00005014731	tRNA-synt_1c_C	PF03950	3.4e-60	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00005024451	1722	573aa	ENSSSCP00005014731

Gene Model

Click here to download ENSSSCG00005015635's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005015635's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005015635	sus_scrofa_wuzhishan	ENSSSCP00005018567	17.3715	11.1906	sus_scrofa_wuzhishan	ENSSSCP00005014731	46.5969	30.0175
ENSSSCG00005015635	sus_scrofa_wuzhishan	ENSSSCP00005008464	30.6641	15.4297	sus_scrofa_wuzhishan	ENSSSCP00005014731	27.3997	13.7871
ENSSSCG00005015635	sus_scrofa_wuzhishan	ENSSSCP00005045798	44	32.7742	sus_scrofa_wuzhishan	ENSSSCP00005014731	59.5113	44.3281
ENSSSCG00005015635	sus_scrofa_wuzhishan	ENSSSCP00005004146	73.6934	59.0592	sus_scrofa_wuzhishan	ENSSSCP00005014731	73.822	59.1623

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005015635

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression