RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00005014735	Gene ID		Accession	-
Symbol	PRPF3	Alias	-	Full Name	NA
Status	Confidence	Length	30264 bases	Strand	Minus strand
Position	KQ002877.1 : 523357 - 553620	RNA binding domain	PWI , PRP3
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005014341	PWI	PF01480	1.3e-13	1
ENSSSCP00005014341	PRP3	PF08572	2.5e-48	2
ENSSSCP00005014298	PWI	PF01480	1.5e-13	1
ENSSSCP00005014298	PRP3	PF08572	1.9e-75	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PRPF3-201	ENSSSCT00005023767	6186	683aa	ENSSSCP00005014298
PRPF3-202	ENSSSCT00005023849	1725	574aa	ENSSSCP00005014341

Gene Model

Click here to download ENSSSCG00005014735's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005014735's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005014735

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	91.0688	90.3367	sus_scrofa_berkshire	ENSSSCP00065042805	97.4922	96.7085
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	86.0908	85.9444	sus_scrofa	ENSSSCP00000057732	99.3243	99.1554
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	91.0688	90.3367	sus_scrofa_bamei	ENSSSCP00050047038	97.4922	96.7085
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	100	100	sus_scrofa_rongchang	ENSSSCP00030034456	100	100
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	91.0688	90.3367	sus_scrofa_landrace	ENSSSCP00045020105	97.4922	96.7085
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	91.8009	90.6296	equus_caballus	ENSECAP00000080950	93.722	92.5262
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	100	100	sus_scrofa_meishan	ENSSSCP00040018850	100	100
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	100	100	bos_taurus	ENSBTAP00000066951	100	100
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	91.0688	90.3367	sus_scrofa_hampshire	ENSSSCP00035029759	97.4922	96.7085
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	91.0688	90.3367	sus_scrofa_jinhua	ENSSSCP00060011901	97.4922	96.7085
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	91.0688	90.3367	sus_scrofa_largewhite	ENSSSCP00025036778	97.4922	96.7085
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	100	100	sus_scrofa_pietrain	ENSSSCP00055042889	100	100
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	100	100	sus_scrofa_usmarc	ENSSSCP00070001423	100	100
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	91.0688	90.3367	sus_scrofa_tibetan	ENSSSCP00015000473	97.4922	96.7085
ENSSSCG00005014735	sus_scrofa_wuzhishan	ENSSSCP00005014298	100	100	ovis_aries_rambouillet	ENSOARP00020010079	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression