RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00005010785	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	49338 bases	Strand	Plus strand
Position	KQ003541.1 : 2457877 - 2507214	RNA binding domain	RRM_1 , PWI
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005010257	RRM_1	PF00076	7.2e-09	1
ENSSSCP00005010225	RRM_1	PF00076	1.2e-08	1
ENSSSCP00005010225	PWI	PF01480	9.8e-13	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00005017169	2421	806aa	ENSSSCP00005010225
-	ENSSSCT00005017218	1533	510aa	ENSSSCP00005010257

Gene Model

Click here to download ENSSSCG00005010785's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005010785's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005010785

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	92.928	92.804	sus_scrofa_berkshire	ENSSSCP00065001898	97.1466	97.0169
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	99.7519	99.6278	sus_scrofa	ENSSSCP00000058947	93.2715	93.1554
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	97.2705	97.1464	sus_scrofa_bamei	ENSSSCP00050033209	95.2612	95.1397
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	58.933	58.8089	sus_scrofa_rongchang	ENSSSCP00030006433	92.4125	92.2179
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	58.933	58.8089	sus_scrofa_landrace	ENSSSCP00045031585	92.4125	92.2179
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	99.6278	99.5037	equus_caballus	ENSECAP00000055818	93.1554	93.0394
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	56.0794	55.8313	sus_scrofa_meishan	ENSSSCP00040038673	91.3131	90.9091
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	99.6278	99.5037	bos_taurus	ENSBTAP00000022826	95.255	95.1364
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	58.933	58.8089	sus_scrofa_hampshire	ENSSSCP00035016094	92.4125	92.2179
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	58.933	58.8089	sus_scrofa_jinhua	ENSSSCP00060037157	92.4125	92.2179
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	58.933	58.8089	sus_scrofa_largewhite	ENSSSCP00025009021	92.4125	92.2179
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	58.933	58.8089	sus_scrofa_pietrain	ENSSSCP00055039944	92.4125	92.2179
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	99.7519	99.6278	sus_scrofa_usmarc	ENSSSCP00070018343	95.3737	95.255
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	58.933	58.8089	sus_scrofa_tibetan	ENSSSCP00015013143	92.4125	92.2179
ENSSSCG00005010785	sus_scrofa_wuzhishan	ENSSSCP00005010225	99.6278	99.5037	ovis_aries_rambouillet	ENSOARP00020014040	95.255	95.1364

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression