RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00005010743	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	24167 bases	Strand	Minus strand
Position	KQ002164.1 : 2520694 - 2544860	RNA binding domain	zf-CCCH_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005010475	zf-CCCH_2	PF14608	4.7e-07	1
ENSSSCP00005010475	zf-CCCH_2	PF14608	4.7e-07	2
ENSSSCP00005010456	zf-CCCH_2	PF14608	7.3e-07	1
ENSSSCP00005010456	zf-CCCH_2	PF14608	7.3e-07	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00005017480	3168	1055aa	ENSSSCP00005010456
-	ENSSSCT00005017506	2781	926aa	ENSSSCP00005010475

Gene Model

Click here to download ENSSSCG00005010743's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005010743's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005022331	41.5892	30.1775	sus_scrofa_wuzhishan	ENSSSCP00005010456	46.6351	33.8389
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005022383	49.1909	30.7443	sus_scrofa_wuzhishan	ENSSSCP00005010456	14.4076	9.00474

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	82.654	81.5166	sus_scrofa_berkshire	ENSSSCP00065004173	74.7856	73.7564
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	90.6161	89.4787	sus_scrofa	ENSSSCP00000073512	76.5412	75.5805
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	81.9905	80.7583	sus_scrofa_bamei	ENSSSCP00050005920	74.1217	73.0077
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	94.218	94.0284	sus_scrofa_rongchang	ENSSSCP00030033185	79.393	79.2332
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	82.5592	81.4218	sus_scrofa_landrace	ENSSSCP00045042776	76.8078	75.7496
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	93.2701	91.564	equus_caballus	ENSECAP00000037471	70.5882	69.297
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	95.4502	94.8815	sus_scrofa_meishan	ENSSSCP00040041162	77.5212	77.0593
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	93.1754	90.5213	bos_taurus	ENSBTAP00000012237	75.4413	73.2924
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	95.4502	94.8815	sus_scrofa_hampshire	ENSSSCP00035031973	77.3426	76.8817
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	95.4502	94.8815	sus_scrofa_jinhua	ENSSSCP00060043486	77.5212	77.0593
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	88.1517	87.2986	sus_scrofa_largewhite	ENSSSCP00025006426	70.0829	69.4047
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	82.654	81.5166	sus_scrofa_pietrain	ENSSSCP00055009305	75.1077	74.0741
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	90.6161	89.3839	sus_scrofa_usmarc	ENSSSCP00070047932	69.832	68.8824
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	82.4645	81.7062	sus_scrofa_tibetan	ENSSSCP00015001304	79.9632	79.2279
ENSSSCG00005010743	sus_scrofa_wuzhishan	ENSSSCP00005010456	93.0806	90.3318	ovis_aries_rambouillet	ENSOARP00020014676	75.3645	73.1389

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression