RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00005009151	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	27269 bases	Strand	Minus strand
Position	KQ003768.1 : 5588432 - 5615700	RNA binding domain	tRNA-synt_1c
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005008439	tRNA-synt_1c	PF00749	8.6e-86	1
ENSSSCP00005008464	tRNA-synt_1c	PF00749	8.8e-86	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00005014167	1524	507aa	ENSSSCP00005008439
-	ENSSSCT00005014206	1539	512aa	ENSSSCP00005008464

Gene Model

Click here to download ENSSSCG00005009151's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005009151's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005004146	26.4808	12.0209	sus_scrofa_wuzhishan	ENSSSCP00005008464	29.6875	13.4766
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005014731	27.3997	13.7871	sus_scrofa_wuzhishan	ENSSSCP00005008464	30.6641	15.4297
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005018567	11.3208	6.50618	sus_scrofa_wuzhishan	ENSSSCP00005008464	33.9844	19.5312
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005045798	21.0323	11.7419	sus_scrofa_wuzhishan	ENSSSCP00005008464	31.8359	17.7734

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	91.4062	89.8438	sus_scrofa_berkshire	ENSSSCP00065024191	89.4837	87.9541
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	82.2266	80.4688	sus_scrofa	ENSSSCP00000011510	87.7083	85.8333
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	91.4062	90.0391	sus_scrofa_bamei	ENSSSCP00050047559	89.4837	88.1453
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	91.4062	90.0391	sus_scrofa_rongchang	ENSSSCP00030042946	89.4837	88.1453
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	91.2109	89.4531	sus_scrofa_landrace	ENSSSCP00045045729	89.2925	87.5717
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	74.8047	69.1406	equus_caballus	ENSECAP00000012757	80.1255	74.0586
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	91.4062	90.0391	sus_scrofa_meishan	ENSSSCP00040035602	89.4837	88.1453
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	88.2812	82.4219	bos_taurus	ENSBTAP00000055967	85.7685	80.0759
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	91.4062	89.8438	sus_scrofa_hampshire	ENSSSCP00035009770	89.4837	87.9541
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	91.4062	89.6484	sus_scrofa_jinhua	ENSSSCP00060045559	89.4837	87.7629
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	91.2109	89.6484	sus_scrofa_largewhite	ENSSSCP00025027396	89.2925	87.7629
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	91.4062	90.0391	sus_scrofa_pietrain	ENSSSCP00055012605	89.4837	88.1453
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	91.0156	89.4531	sus_scrofa_usmarc	ENSSSCP00070034868	89.272	87.7395
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	91.4062	90.0391	sus_scrofa_tibetan	ENSSSCP00015015216	89.4837	88.1453
ENSSSCG00005009151	sus_scrofa_wuzhishan	ENSSSCP00005008464	87.5	82.6172	ovis_aries_rambouillet	ENSOARP00020032195	85.6597	80.8795

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression