Description

Ensembl ID ENSSSCG00005009115 Gene ID 100515203 Accession -
Symbol PTBP2 Alias - Full Name polypyrimidine tract binding protein 2
Status Confidence Length 80824 bases Strand Plus strand
Position KQ003757.1 : 1928880 - 2009703 RNA binding domain RRM_5 , RRM_8 , RRM_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00005008745 RRM_5 PF13893 1.7e-55 1
ENSSSCP00005008745 RRM_5 PF13893 1.7e-55 2
ENSSSCP00005008745 RRM_5 PF13893 1.7e-55 3
ENSSSCP00005008745 RRM_8 PF11835 1.1e-15 4
ENSSSCP00005008745 RRM_1 PF00076 1.5e-31 5
ENSSSCP00005008745 RRM_1 PF00076 1.5e-31 6
ENSSSCP00005008745 RRM_1 PF00076 1.5e-31 7
ENSSSCP00005008488 RRM_5 PF13893 2.3e-55 1
ENSSSCP00005008488 RRM_5 PF13893 2.3e-55 2
ENSSSCP00005008488 RRM_5 PF13893 2.3e-55 3
ENSSSCP00005008488 RRM_8 PF11835 1.2e-15 4
ENSSSCP00005008488 RRM_1 PF00076 2.2e-31 5
ENSSSCP00005008488 RRM_1 PF00076 2.2e-31 6
ENSSSCP00005008488 RRM_1 PF00076 2.2e-31 7
ENSSSCP00005009005 RRM_5 PF13893 3e-54 1
ENSSSCP00005009005 RRM_5 PF13893 3e-54 2
ENSSSCP00005009005 RRM_8 PF11835 1.3e-15 3
ENSSSCP00005009005 RRM_1 PF00076 8.9e-32 4
ENSSSCP00005009005 RRM_1 PF00076 8.9e-32 5
ENSSSCP00005009005 RRM_1 PF00076 8.9e-32 6
ENSSSCP00005009037 RRM_5 PF13893 9.1e-53 1
ENSSSCP00005009037 RRM_5 PF13893 9.1e-53 2
ENSSSCP00005009037 RRM_8 PF11835 1.2e-15 3
ENSSSCP00005009037 RRM_1 PF00076 4.5e-25 4
ENSSSCP00005009037 RRM_1 PF00076 4.5e-25 5
ENSSSCP00005008967 RRM_5 PF13893 2.4e-11 1
ENSSSCP00005008967 RRM_8 PF11835 2e-15 2
ENSSSCP00005008967 RRM_1 PF00076 1.1e-12 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
PTBP2-201 ENSSSCT00005014237 3068 537aa ENSSSCP00005008488
PTBP2-202 ENSSSCT00005014647 3271 501aa ENSSSCP00005008745
PTBP2-205 ENSSSCT00005015019 3019 356aa ENSSSCP00005008967
PTBP2-204 ENSSSCT00005015100 2134 531aa ENSSSCP00005009005
PTBP2-203 ENSSSCT00005015151 2047 506aa ENSSSCP00005009037

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000502483981.613568.2927sus_scrofa_wuzhishanENSSSCP0000500848881.005667.784
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000503665939.641423.7052sus_scrofa_wuzhishanENSSSCP0000500848837.057722.1601
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000504517336.979222.2222sus_scrofa_wuzhishanENSSSCP0000500848839.664823.8361
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000501867578.558967.4868sus_scrofa_wuzhishanENSSSCP0000500848883.240271.5084
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000501205414.69398sus_scrofa_wuzhishanENSSSCP0000500848833.519618.2495

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848899.441399.4413sus_scrofa_berkshireENSSSCP0006503001499.441399.4413
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848899.441399.4413sus_scrofaENSSSCP0000002207599.441399.4413
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848899.441399.4413sus_scrofa_bameiENSSSCP0005000657199.441399.4413
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848899.441399.4413sus_scrofa_rongchangENSSSCP0003003203499.441399.4413
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848899.441399.4413sus_scrofa_landraceENSSSCP0004504038499.441399.4413
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848899.441399.4413equus_caballusENSECAP0000007886099.441399.4413
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848899.441399.4413sus_scrofa_meishanENSSSCP0004001876099.441399.4413
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848897.392996.8343bos_taurusENSBTAP0000007122598.308397.7444
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848899.441399.4413sus_scrofa_hampshireENSSSCP0003500661999.441399.4413
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848899.441399.4413sus_scrofa_jinhuaENSSSCP0006000571199.441399.4413
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848899.441399.4413sus_scrofa_largewhiteENSSSCP0002503664499.441399.4413
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848899.441399.4413sus_scrofa_pietrainENSSSCP0005500270199.441399.4413
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848898.32498.324sus_scrofa_usmarcENSSSCP0007001995199.248199.2481
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848892.178891.9926sus_scrofa_tibetanENSSSCP0001501944098.802498.6028
ENSSSCG00005009115sus_scrofa_wuzhishanENSSSCP0000500848899.255198.6965ovis_aries_rambouilletENSOARP0002000142099.440398.8806

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression