RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSPAG00000020448	Gene ID	103354323	Accession	-
Symbol	tars3	Alias	-	Full Name	probable threonine--tRNA ligase 2, cytoplasmic
Status	Confidence	Length	12156 bases	Strand	Plus strand
Position	KK580175.1 : 380929 - 393084	RNA binding domain	HGTP_anticodon , tRNA_SAD , tRNA-synt_2b
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSPAP00000027138	HGTP_anticodon	PF03129	2.3e-18	1
ENSSPAP00000027138	tRNA_SAD	PF07973	4.6e-12	2
ENSSPAP00000027138	tRNA-synt_2b	PF00587	3.2e-34	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSPAT00000027582	2978	811aa	ENSSPAP00000027138

Gene Model

Click here to download ENSSPAG00000020448's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSPAG00000020448's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000030768	38.3023	20.2899	stegastes_partitus	ENSSPAP00000027138	22.8113	12.0838
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000025009	67.2965	50.1453	stegastes_partitus	ENSSPAP00000027138	57.09	42.5401
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000016916	42.7729	24.1888	stegastes_partitus	ENSSPAP00000027138	17.8792	10.111
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000026081	85.1541	73.3894	stegastes_partitus	ENSSPAP00000027138	74.9692	64.6116

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	89.5191	85.3268	poecilia_reticulata	ENSPREP00000011963	93.1964	88.8318
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	90.7522	86.0666	fundulus_heteroclitus	ENSFHEP00000009164	71.3178	67.6357
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	93.8348	89.6424	xiphophorus_maculatus	ENSXMAP00000016731	93.4889	89.312
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	93.0949	87.053	oryzias_latipes	ENSORLP00000017952	92.9803	86.9458
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	94.5746	90.2589	oreochromis_niloticus	ENSONIP00000077600	92.4096	88.1928
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	95.561	91.3687	haplochromis_burtoni	ENSHBUP00000018833	95.2088	91.0319
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	65.8446	62.6387	cyclopterus_lumpus	ENSCLMP00005001344	96.3899	91.6968
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	97.164	93.7115	lates_calcarifer	ENSLCAP00010059044	96.925	93.4809
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	95.561	91.2454	astatotilapia_calliptera	ENSACLP00000027394	95.2088	90.9091
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	93.0949	88.5327	cyprinodon_variegatus	ENSCVAP00000025076	94.0224	89.4147
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	96.0543	92.1085	dicentrarchus_labrax	ENSDLAP00005057382	90.8985	87.1645
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	95.561	91.2454	sparus_aurata	ENSSAUP00010056034	95.326	91.0209
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	90.6289	81.5043	takifugu_rubripes	ENSTRUP00000007981	91.3043	82.1118
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	93.5882	88.7793	oryzias_melastigma	ENSOMEP00000015536	93.5882	88.7793
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	55.857	52.8977	neolamprologus_brichardi	ENSNBRP00000010352	94.375	89.375
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	93.7115	89.2725	poecilia_formosa	ENSPFOP00000014158	93.2515	88.8344
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	96.1776	92.6017	seriola_dumerili	ENSSDUP00000010245	95.941	92.3739
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	13.5635	12.0838	cottoperca_gobio	ENSCGOP00000032885	80.8824	72.0588
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	83.8471	81.2577	amphilophus_citrinellus	ENSACIP00000006646	97.0043	94.0086
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	93.7115	88.5327	kryptolebias_marmoratus	ENSKMAP00000002310	93.1373	87.9902
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	83.9704	79.6547	gasterosteus_aculeatus	ENSGACP00000019326	93.8017	88.9807
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	91.2454	86.6831	scophthalmus_maximus	ENSSMAP00000047848	93.9086	89.2132
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	21.2084	17.7559	tetraodon_nigroviridis	ENSTNIP00000004523	89.1192	74.6114
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	87.5462	77.6819	tetraodon_nigroviridis	ENSTNIP00000014887	88.75	78.75
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	92.8483	87.6695	nothobranchius_furzeri	ENSNFUP00015049182	92.6199	87.4539
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	93.7115	89.2725	poecilia_latipinna	ENSPLAP00000008551	93.3661	88.9435
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	69.2972	67.8175	acanthochromis_polyacanthus	ENSAPOP00000018376	99.6454	97.5177
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	98.6436	95.9309	amphiprion_ocellaris	ENSAOCP00000023269	98.401	95.695
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	77.0654	73.8594	labrus_bergylta	ENSLBEP00000023801	98.4252	94.3307
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	93.8348	88.9026	labrus_bergylta	ENSLBEP00000024260	93.1457	88.2497
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	94.8212	90.2589	anabas_testudineus	ENSATEP00000005783	94.8212	90.2589
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	95.6843	91.492	larimichthys_crocea	ENSLCRP00005026868	95.098	90.9314
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	89.1492	82.8607	oryzias_sinensis	ENSOSIP00000049074	87.2135	81.0615
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	95.561	91.3687	maylandia_zebra	ENSMZEP00005007500	95.2088	91.0319
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	93.8348	88.9026	oryzias_javanicus	ENSOJAP00000010930	93.8348	88.9026
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	92.9716	86.6831	betta_splendens	ENSBSLP00000032264	93.2015	86.8974
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	79.1615	76.2022	pundamilia_nyererei	ENSPNYP00000012924	98.3155	94.6401
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	93.8348	89.6424	sander_lucioperca	ENSSLUP00000033593	95.603	91.3317
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	93.7115	88.0395	cynoglossus_semilaevis	ENSCSEP00000017371	93.4809	87.8229
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	94.4513	89.7657	mastacembelus_armatus	ENSMAMP00000007787	93.3008	88.6723
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	98.2737	95.561	amphiprion_percula	ENSAPEP00000011213	98.032	95.326
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	96.0543	92.3551	seriola_lalandi_dorsalis	ENSSLDP00000021232	95.818	92.1279
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	82.8607	76.5721	hippocampus_comes	ENSHCOP00000017521	93.4631	86.37
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	80.7645	69.1739	petromyzon_marinus	ENSPMAP00000005505	80.2696	68.75
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	63.9951	55.2404	ciona_intestinalis	ENSCINP00000008908	82.5119	71.2242
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	78.4217	67.8175	eptatretus_burgeri	ENSEBUP00000017573	82.1705	71.0594
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	81.9975	72.6264	latimeria_chalumnae	ENSLACP00000021270	84.8214	75.1275
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	68.3107	59.8027	lepisosteus_oculatus	ENSLOCP00000017977	71.1168	62.2593
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	90.2589	83.8471	clupea_harengus	ENSCHAP00000016446	89.5961	83.2313
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	51.0481	47.7189	danio_rerio	ENSDARP00000138354	95.612	89.3764
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	89.889	82.6141	astyanax_mexicanus	ENSAMXP00000021476	85.1636	78.271
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	80.3946	73.1196	carassius_auratus	ENSCARP00000057394	84.456	76.8135
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	90.6289	82.7374	ictalurus_punctatus	ENSIPUP00000015009	89.4161	81.6302
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	89.2725	80.148	electrophorus_electricus	ENSEEEP00000006889	87.3341	78.4077
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	89.889	83.6005	esox_lucius	ENSELUP00000030269	89.3382	83.0882
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	91.492	84.8335	oncorhynchus_kisutch	ENSOKIP00005035456	89.8305	83.293
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	90.9988	84.5869	oncorhynchus_kisutch	ENSOKIP00005054611	89.2382	82.9504
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	91.2454	84.7102	oncorhynchus_mykiss	ENSOMYP00000069416	89.48	83.0713
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	91.9852	84.9568	oncorhynchus_mykiss	ENSOMYP00000098148	89.8795	83.012
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	87.4229	80.7645	salmo_salar	ENSSSAP00000093598	89.6334	82.8066
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	91.7386	84.8335	salmo_salar	ENSSSAP00000099040	89.5307	82.7918
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	91.7386	84.8335	salmo_trutta	ENSSTUP00000032626	83.5955	77.3034
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	86.5598	80.2713	salmo_trutta	ENSSTUP00000062044	90.5806	84
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	90.3822	82.8607	gadus_morhua	ENSGMOP00000060370	89.8284	82.3529
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	82.6141	71.1467	xenopus_tropicalis	ENSXETP00000043847	82.3096	70.8845
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	66.9544	54.9938	chrysemys_picta_bellii	ENSCPBP00000010762	76.264	62.6404
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	29.4698	23.6745	sphenodon_punctatus	ENSSPUP00000001945	72.4242	58.1818
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	79.7781	67.5709	notechis_scutatus	ENSNSUP00000026521	81.0777	68.6717
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	65.598	53.5142	pelodiscus_sinensis	ENSPSIP00000017599	81.2214	66.2595
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	41.1837	35.2651	erpetoichthys_calabaricus	ENSECRP00000033134	84.9873	72.7735
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	80.148	67.8175	naja_naja	ENSNNAP00000007895	83.4403	70.6033
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	90.8755	83.3539	pygocentrus_nattereri	ENSPNAP00000009846	89.2252	81.8402
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	91.7386	85.2035	hucho_hucho	ENSHHUP00000047205	89.2086	82.8537
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	91.3687	85.0801	hucho_hucho	ENSHHUP00000011192	88.4248	82.3389
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	85.3268	78.1751	sinocyclocheilus_grahami	ENSSGRP00000045222	88.7179	81.2821
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	90.8755	84.3403	oncorhynchus_tshawytscha	ENSOTSP00005029322	89.1173	82.7086
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	91.8619	84.9568	oncorhynchus_tshawytscha	ENSOTSP00005027687	90.0846	83.3132
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	66.4612	54.0074	chelonoidis_abingdonii	ENSCABP00000014521	70.5497	57.3298
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	92.8483	87.6695	myripristis_murdjan	ENSMMDP00005043456	92.6199	87.4539
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	81.7509	70.6535	leptobrachium_leishanense	ENSLLEP00000007829	81.7509	70.6535
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	66.8311	54.3773	gopherus_evgoodei	ENSGEVP00005020659	77.3181	62.9101
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	82.3674	75.4624	denticeps_clupeoides	ENSDCDP00000055418	92.3928	84.6473
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	88.7793	81.1344	denticeps_clupeoides	ENSDCDP00000057454	89.8876	82.1473
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	87.9162	80.7645	cyprinus_carpio_carpio	ENSCCRP00000116822	89.2365	81.9775
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	88.9026	81.6276	cyprinus_carpio_carpio	ENSCCRP00000085847	88.2497	81.0282
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	88.1628	79.1615	scleropages_formosus	ENSSFOP00015026586	82.3733	73.9631
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	69.4205	56.4735	terrapene_carolina_triunguis	ENSTMTP00000008708	69.5921	56.6131
ENSSPAG00000020448	stegastes_partitus	ENSSPAP00000027138	88.656	79.4081	paramormyrops_kingsleyae	ENSPKIP00000001925	89.0954	79.8017

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression