Description

Ensembl ID ENSSOCG00000016331 Gene ID Accession -
Symbol Alias - Full Name UPF2 regulator of nonsense mediated mRNA decay
Status Confidence Length 51553 bases Strand Plus strand
Position NIFN01000079.1 : 2597043 - 2648595 RNA binding domain Upf2 , MIF4G
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSOCP00000022053 Upf2 PF04050 5e-33 1
ENSSOCP00000022053 MIF4G PF02854 2.6e-75 2
ENSSOCP00000022053 MIF4G PF02854 2.6e-75 3
ENSSOCP00000022053 MIF4G PF02854 2.6e-75 4
ENSSOCP00000022066 Upf2 PF04050 5.5e-33 1
ENSSOCP00000022066 MIF4G PF02854 2.4e-75 2
ENSSOCP00000022066 MIF4G PF02854 2.4e-75 3
ENSSOCP00000022066 MIF4G PF02854 2.4e-75 4
ENSSOCP00000022059 Upf2 PF04050 5.6e-33 1
ENSSOCP00000022059 MIF4G PF02854 2.5e-75 2
ENSSOCP00000022059 MIF4G PF02854 2.5e-75 3
ENSSOCP00000022059 MIF4G PF02854 2.5e-75 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSOCT00000022601 3810 1269aa ENSSOCP00000022053
- ENSSOCT00000022607 3765 1254aa ENSSOCP00000022059
- ENSSOCT00000022614 3711 1236aa ENSSOCP00000022066

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSOCG00000016331

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSOCG00000016331

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression