RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSLDG00000007433	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	690 bases	Strand	Minus strand
Position	PEQF01026814.1 : 70 - 759	RNA binding domain	Ribosomal_L24e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSLDP00000009378	Ribosomal_L24e	PF01246	6.7e-29	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSLDT00000009704	459	153aa	ENSSLDP00000009378

Gene Model

Click here to download ENSSLDG00000007433's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSLDG00000007433's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSLDG00000007433	seriola_lalandi_dorsalis	ENSSLDP00000024040	61.7834	47.1338	seriola_lalandi_dorsalis	ENSSLDP00000009378	63.3987	48.366
ENSSLDG00000007433	seriola_lalandi_dorsalis	ENSSLDP00000021492	39.0244	23.7805	seriola_lalandi_dorsalis	ENSSLDP00000009378	41.8301	25.4902

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSLDG00000007433	seriola_lalandi_dorsalis	ENSSLDP00000009378	56.8627	39.8693	saccharomyces_cerevisiae	YGR148C	56.129	39.3548
ENSSLDG00000007433	seriola_lalandi_dorsalis	ENSSLDP00000009378	56.8627	39.8693	saccharomyces_cerevisiae	YGL031C	56.129	39.3548

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression