RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSHBG00005013732	Gene ID	115601893	Accession	-
Symbol		Alias	-	Full Name	mitochondrial rRNA methyltransferase 3
Status	Confidence	Length	2147 bases	Strand	Minus strand
Position	RXXE01000055.1 : 7138852 - 7140998	RNA binding domain	SpoU_methylase
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSHBP00005015715	SpoU_methylase	PF00588	1.9e-24	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSHBT00005018822	1325	407aa	ENSSHBP00005015715

Gene Model

Click here to download ENSSHBG00005013732's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSHBG00005013732's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSHBG00005013732

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	45.9459	27.2727	drosophila_melanogaster	FBpp0074739	45.9459	27.2727
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	64.1278	48.403	clupea_harengus	ENSCHAP00000007860	56.129	42.3656
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	55.0369	40.5405	danio_rerio	ENSDARP00000091013	49.8886	36.7483
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	60.688	47.9115	danio_rerio	ENSDARP00000119941	55.7562	44.0181
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	62.8993	49.6315	carassius_auratus	ENSCARP00000103373	60.3774	47.6415
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	56.5111	41.0319	carassius_auratus	ENSCARP00000023073	49.7836	36.1472
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	58.231	46.683	astyanax_mexicanus	ENSAMXP00000030246	53.7415	43.0839
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	57.7396	45.2088	astyanax_mexicanus	ENSAMXP00000042771	52.4554	41.0714
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	55.774	42.9975	ictalurus_punctatus	ENSIPUP00000008501	50.5568	38.9755
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	61.9165	46.4373	ictalurus_punctatus	ENSIPUP00000024817	56.1247	42.0935
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	57.7396	43.9803	electrophorus_electricus	ENSEEEP00000040836	51.087	38.913
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	63.3907	48.8943	salmo_trutta	ENSSTUP00000109906	56.5789	43.6404
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	64.8649	50.1228	gadus_morhua	ENSGMOP00000032852	57.1429	44.1558
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	64.1278	48.1572	fundulus_heteroclitus	ENSFHEP00000002513	57.8714	43.459
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	66.5848	50.3685	xiphophorus_maculatus	ENSXMAP00000019155	60.2222	45.5556
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	64.6192	49.6315	cyclopterus_lumpus	ENSCLMP00005017999	59.1011	45.3933
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	66.5848	50.3685	oryzias_latipes	ENSORLP00000039093	61.036	46.1712
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	66.3391	50.3685	haplochromis_burtoni	ENSHBUP00000031380	59.3407	45.0549
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	66.8305	50.6143	oreochromis_niloticus	ENSONIP00000016543	59.9119	45.3745
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.3563	50.3685	astatotilapia_calliptera	ENSACLP00000008580	58.0786	44.7598
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.1106	50.1228	sparus_aurata	ENSSAUP00010001739	58.114	44.7368
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	72.973	64.8649	chrysemys_picta_bellii	ENSCPBP00000022048	62.5263	55.5789
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	66.0934	54.0541	ornithorhynchus_anatinus	ENSOANP00000015733	62.413	51.0441
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.3563	54.7912	bos_taurus	ENSBTAP00000025502	64.4068	53.9952
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.1106	49.3857	dicentrarchus_labrax	ENSDLAP00005054431	56.7452	43.0407
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	67.5676	52.0885	erpetoichthys_calabaricus	ENSECRP00000010754	59.9129	46.1874
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	63.6364	53.0713	anolis_carolinensis	ENSACAP00000015695	63.7931	53.202
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.3563	54.7912	bos_indicus_hybrid	ENSBIXP00005009222	64.2512	53.8647
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	66.0934	49.6315	neolamprologus_brichardi	ENSNBRP00000026368	59.6452	44.7894
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	66.3391	50.86	oryzias_melastigma	ENSOMEP00000003317	62.069	47.5862
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.1106	50.1228	kryptolebias_marmoratus	ENSKMAP00000025730	61.3426	47.2222
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	57.9853	45.4545	pygocentrus_nattereri	ENSPNAP00000028736	54.1284	42.4312
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	66.5848	49.8772	poecilia_formosa	ENSPFOP00000010304	59.6916	44.7137
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	66.5848	49.6315	poecilia_latipinna	ENSPLAP00000029116	59.6916	44.4934
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	66.3391	55.2826	catagonus_wagneri	ENSCWAP00000002777	65.8537	54.878
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	64.8649	48.6486	cottoperca_gobio	ENSCGOP00000053648	57.0194	42.7646
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.602	51.3514	scophthalmus_maximus	ENSSMAP00000011680	59.0708	46.2389
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.3563	47.9115	labrus_bergylta	ENSLBEP00000028041	58.7196	43.0464
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	64.8649	49.14	amphilophus_citrinellus	ENSACIP00000010103	58.7973	44.5434
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	63.8821	49.3857	hucho_hucho	ENSHHUP00000060496	54.9683	42.4947
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	64.1278	47.4201	anabas_testudineus	ENSATEP00000032343	56.9869	42.1397
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.3563	54.7912	bos_mutus	ENSBMUP00000012631	64.4068	53.9952
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	51.8428	38.0835	sinocyclocheilus_grahami	ENSSGRP00000090850	54.8052	40.2597
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	62.8993	50.3685	sinocyclocheilus_grahami	ENSSGRP00000025969	57.2707	45.8613
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	62.8993	46.683	acanthochromis_polyacanthus	ENSAPOP00000001241	58.0499	43.0839
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.8477	49.3857	amphiprion_ocellaris	ENSAOCP00000031744	58.6433	43.9825
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	64.3735	50.86	salvator_merianae	ENSSMRP00000002334	62.5298	49.4033
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.8477	50.1228	maylandia_zebra	ENSMZEP00005010399	58.9011	44.8352
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.3563	49.6315	nothobranchius_furzeri	ENSNFUP00015005313	58.7196	44.5916
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	63.6364	47.1744	hippocampus_comes	ENSHCOP00000025464	60.2326	44.6512
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	73.7101	66.0934	chelonoidis_abingdonii	ENSCABP00000030657	71.09	63.7441
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	64.8649	49.14	mastacembelus_armatus	ENSMAMP00000027212	58.5366	44.3459
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.8477	50.3685	oryzias_javanicus	ENSOJAP00000042436	61.6092	47.1264
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	66.0934	49.8772	oryzias_sinensis	ENSOSIP00000038930	60.5856	45.7207
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.1106	50.6143	stegastes_partitus	ENSSPAP00000029629	57.4837	44.6855
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.3563	50.3685	scleropages_formosus	ENSSFOP00015066527	54.9587	42.3554
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.8477	49.3857	amphiprion_percula	ENSAPEP00000013213	58.6433	43.9825
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	64.1278	49.14	larimichthys_crocea	ENSLCRP00005009954	59.0498	45.2489
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	64.1278	48.1572	cynoglossus_semilaevis	ENSCSEP00000021168	56.4935	42.4242
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.602	53.5627	leptobrachium_leishanense	ENSLLEP00000041273	63.1206	51.5366
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	65.3563	50.86	pundamilia_nyererei	ENSPNYP00000022263	59.375	46.2054
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	64.8649	50.6143	pundamilia_nyererei	ENSPNYP00000001283	60.97	47.5751
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	54.7912	40.2948	cyprinus_carpio_carpio	ENSCCRP00000054731	47.8541	35.1931
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	62.4079	49.6315	cyprinus_carpio_carpio	ENSCCRP00000115315	59.3458	47.1963
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	66.0934	51.8428	myripristis_murdjan	ENSMMDP00005025823	57.9741	45.4741
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	66.8305	51.1057	seriola_lalandi_dorsalis	ENSSLDP00000013878	58.8745	45.0216
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	66.8305	51.1057	seriola_lalandi_dorsalis	ENSSLDP00000013776	58.8745	45.0216
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	72.2359	64.8649	gopherus_evgoodei	ENSGEVP00005019179	69.5035	62.4113
ENSSHBG00005013732	strigops_habroptila	ENSSHBP00005015715	76.1671	66.8305	terrapene_carolina_triunguis	ENSTMTP00000031711	72.093	63.2558

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression