RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSFOG00015030911	Gene ID		Accession	-
Symbol	larp6b	Alias	-	Full Name	La ribonucleoprotein 6, translational regulator b
Status	Confidence	Length	3565 bases	Strand	Minus strand
Position	25 : 18123249 - 18126813	RNA binding domain	SUZ-C , La
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSFOP00015058904	SUZ-C	PF12901	1.1e-05	1
ENSSFOP00015058904	La	PF05383	6.6e-15	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
larp6b-201	ENSSFOT00015039563	2182	476aa	ENSSFOP00015058904

Gene Model

Click here to download ENSSFOG00015030911's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSFOG00015030911's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015028141	12.0656	5.98456	scleropages_formosus	ENSSFOP00015058904	26.2605	13.0252
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015031743	12.1043	5.77281	scleropages_formosus	ENSSFOP00015058904	27.3109	13.0252
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015000741	28.642	12.5926	scleropages_formosus	ENSSFOP00015058904	24.3697	10.7143
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015076608	14.7139	7.35695	scleropages_formosus	ENSSFOP00015058904	22.6891	11.3445
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015061618	46.1538	31.5385	scleropages_formosus	ENSSFOP00015058904	50.4202	34.4538
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058148	35.9756	24.2378	scleropages_formosus	ENSSFOP00015058904	49.5798	33.4034
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015030127	23.6427	11.5587	scleropages_formosus	ENSSFOP00015058904	28.3613	13.8655
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015021928	13.9623	7.79874	scleropages_formosus	ENSSFOP00015058904	23.3193	13.0252
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015069538	14.5455	7.66234	scleropages_formosus	ENSSFOP00015058904	23.5294	12.395

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	43.2773	25.6303	drosophila_melanogaster	FBpp0311633	23.7601	14.0715
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	40.9664	25.6303	ciona_intestinalis	ENSCINP00000017569	39.7959	24.898
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	70.3782	56.0924	clupea_harengus	ENSCHAP00000061765	70.0837	55.8577
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	69.3277	54.8319	danio_rerio	ENSDARP00000019822	70.0637	55.414
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	67.2269	53.3613	carassius_auratus	ENSCARP00000028014	67.3684	53.4737
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	67.2269	53.3613	carassius_auratus	ENSCARP00000110477	67.3684	53.4737
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	67.8571	53.9916	carassius_auratus	ENSCARP00000013274	68.1435	54.2194
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	68.6975	55.2521	astyanax_mexicanus	ENSAMXP00000019518	61.6981	49.6226
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	67.2269	52.9412	ictalurus_punctatus	ENSIPUP00000011147	68.0851	53.617
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	69.3277	55.8824	electrophorus_electricus	ENSEEEP00000051379	70.5128	56.8376
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	72.2689	60.084	esox_lucius	ENSELUP00000049355	73.5043	61.1111
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	73.3193	60.084	oncorhynchus_kisutch	ENSOKIP00005003172	68.1641	55.8594
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	73.7395	60.5042	oncorhynchus_mykiss	ENSOMYP00000002881	70.3407	57.7154
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	73.7395	60.5042	salmo_trutta	ENSSTUP00000015883	70.3407	57.7154
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	73.7395	60.5042	salmo_salar	ENSSSAP00000091100	69.0945	56.6929
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	39.4958	27.7311	fundulus_heteroclitus	ENSFHEP00000009177	45.7421	32.1168
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	38.8655	27.7311	poecilia_reticulata	ENSPREP00000017526	45.5665	32.5123
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	38.6555	28.1513	xiphophorus_maculatus	ENSXMAP00000030376	49.0667	35.7333
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	41.1765	29.8319	cyclopterus_lumpus	ENSCLMP00005044928	52.8302	38.2749
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	38.8655	28.7815	oreochromis_niloticus	ENSONIP00000070823	48.1771	35.6771
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	38.2353	28.3613	astatotilapia_calliptera	ENSACLP00000014670	45.5	33.75
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	38.6555	28.5714	haplochromis_burtoni	ENSHBUP00000028525	45.5446	33.6634
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	40.9664	28.7815	sparus_aurata	ENSSAUP00010067292	50.1285	35.2185
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	39.0756	28.9916	lates_calcarifer	ENSLCAP00010036658	48.4375	35.9375
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	42.2269	30.2521	dicentrarchus_labrax	ENSDLAP00005025293	47.9714	34.3675
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	37.605	24.3697	cyprinodon_variegatus	ENSCVAP00000026529	46.2532	29.9742
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	39.2857	28.5714	neolamprologus_brichardi	ENSNBRP00000016498	47.1033	34.2569
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	32.563	22.8992	seriola_dumerili	ENSSDUP00000013549	47.2561	33.2317
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	68.9076	54.2017	pygocentrus_nattereri	ENSPNAP00000017580	68.3333	53.75
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	37.8151	27.9412	poecilia_latipinna	ENSPLAP00000003601	49.7238	36.7403
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	22.0588	16.8067	poecilia_formosa	ENSPFOP00000027279	63.6364	48.4848
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	30.8824	18.9076	ciona_savignyi	ENSCSAVP00000019977	53.2609	32.6087
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	40.5462	29.4118	labrus_bergylta	ENSLBEP00000021446	44.7796	32.4826
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	38.8655	27.9412	amphilophus_citrinellus	ENSACIP00000010657	44.0476	31.6667
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	74.3698	60.9244	hucho_hucho	ENSHHUP00000059112	71.371	58.4677
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	41.1765	28.9916	anabas_testudineus	ENSATEP00000030734	50.7772	35.7513
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	73.7395	60.5042	oncorhynchus_tshawytscha	ENSOTSP00005070828	70.3407	57.7154
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	39.916	28.3613	amphiprion_ocellaris	ENSAOCP00000001608	48.2234	34.264
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	37.605	27.3109	acanthochromis_polyacanthus	ENSAPOP00000022420	49.7222	36.1111
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	69.3277	56.9328	denticeps_clupeoides	ENSDCDP00000035024	69.4737	57.0526
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	36.9748	28.3613	oryzias_javanicus	ENSOJAP00000019330	52.381	40.1786
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	39.2857	28.9916	pundamilia_nyererei	ENSPNYP00000009254	44.6301	32.9356
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	40.9664	29.4118	mastacembelus_armatus	ENSMAMP00000008097	49.2424	35.3535
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	67.6471	54.6218	sinocyclocheilus_grahami	ENSSGRP00000019800	67.5052	54.5073
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	56.5126	43.6975	sinocyclocheilus_grahami	ENSSGRP00000086341	64.0476	49.5238
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	39.7059	27.9412	larimichthys_crocea	ENSLCRP00005003771	48.9637	34.456
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	66.8067	53.3613	cyprinus_carpio_carpio	ENSCCRP00000129596	66.9474	53.4737
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	67.8571	53.7815	cyprinus_carpio_carpio	ENSCCRP00000079602	68.7234	54.4681
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	39.916	28.3613	amphiprion_percula	ENSAPEP00000032031	47.7387	33.9196
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	38.0252	27.9412	oryzias_sinensis	ENSOSIP00000038996	45.0249	33.0846
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	71.8487	63.4454	paramormyrops_kingsleyae	ENSPKIP00000012048	70.9544	62.6556
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	40.9664	29.4118	sander_lucioperca	ENSSLUP00000049699	49.4924	35.533
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	36.3445	25.8403	nothobranchius_furzeri	ENSNFUP00015052888	46.8835	33.3333
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	39.0756	28.3613	seriola_lalandi_dorsalis	ENSSLDP00000021903	43.3566	31.4685
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	38.2353	28.3613	maylandia_zebra	ENSMZEP00005032750	45.5	33.75
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	42.437	31.5126	myripristis_murdjan	ENSMMDP00005034015	46.9767	34.8837
ENSSFOG00015030911	scleropages_formosus	ENSSFOP00015058904	40.7563	29.4118	stegastes_partitus	ENSSPAP00000018980	46.4115	33.4928

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression