Description

Ensembl ID ENSSFOG00015011572 Gene ID 108942537 Accession -
Symbol rtcb Alias - Full Name tRNA-splicing ligase RtcB homolog
Status Confidence Length 6898 bases Strand Plus strand
Position 5 : 660378 - 667275 RNA binding domain RtcB
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSFOP00015018015 RtcB PF01139 4.1e-144 1
ENSSFOP00015018034 RtcB PF01139 2.5e-139 1
ENSSFOP00015063444 RtcB PF01139 2.2e-17 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
RTCB-201 ENSSFOT00015018222 2123 505aa ENSSFOP00015018015
RTCB-202 ENSSFOT00015018241 2105 499aa ENSSFOP00015018034
RTCB-203 ENSSFOT00015080768 579 164aa ENSSFOP00015063444

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSFOG00015011572scleropages_formosusENSSFOP0001500110598.217894.2574scleropages_formosusENSSFOP0001501801598.217894.2574

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801585.742672.4753caenorhabditis_elegansF16A11.2a.185.742672.4753
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801590.891181.9802drosophila_melanogasterFBpp008074690.711581.8182
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801589.90180.396ciona_intestinalisENSCINP0000000792290.079480.5556
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801595.643690.099petromyzon_marinusENSPMAP0000000625395.643690.099
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801589.90185.1485eptatretus_burgeriENSEBUP0000002311793.995989.0269
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.2673callorhinchus_miliiENSCMIP0000004844298.217893.2673
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.425793.2673latimeria_chalumnaeENSLACP0000001480597.425793.2673
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801593.465389.703clupea_harengusENSCHAP0000000587080.408977.1721
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.425793.4653xenopus_tropicalisENSXETP0000002521293.181889.3939
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.623893.6634crocodylus_porosusENSCPRP0000502682497.623893.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.623893.0693chrysemys_picta_belliiENSCPBP0000003308197.623893.0693
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.227792.2772sphenodon_punctatusENSSPUP0000001655497.227792.2772
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801568.118862.5743laticauda_laticaudataENSLLTP0000000139787.088680
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801570.891168.1188notechis_scutatusENSNSUP0000001674668.846266.1538
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.623893.2673pseudonaja_textilisENSPTXP0000001220997.623893.2673
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.623893.8614anas_platyrhynchos_platyrhynchosENSAPLP0000000787297.623893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.425793.6634gallus_gallusENSGALP0001002165697.425793.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801535.643634.0594meleagris_gallopavoENSMGAP0000003473495.238191.0053
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801564.356461.1881meleagris_gallopavoENSMGAP0000001350695.029290.3509
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.821894.2574serinus_canariaENSSCAP0000000481997.821894.2574
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.821894.2574parus_majorENSPMJP0000001070797.821894.2574
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801588.316881.3861sarcophilus_harrisiiENSSHAP0000002824087.109480.2734
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019894.2574ornithorhynchus_anatinusENSOANP0000000877398.019894.2574
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801584.158479.802choloepus_hoffmanniENSCHOP0000000806984.49380.1193
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801573.267371.0891notamacropus_eugeniiENSMEUP0000000713373.267371.0891
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801577.029772.4753dasypus_novemcinctusENSDNOP0000000964895.343189.7059
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.6634callithrix_jacchusENSCJAP0000001138698.019893.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801578.415874.6535erinaceus_europaeusENSEEUP0000000571588.590684.34
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801592.079287.9208echinops_telfairiENSETEP0000000160992.079287.9208
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.821893.6634cercocebus_atysENSCATP0000001929197.821893.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.821893.4653macaca_mulattaENSMMUP0000000884697.821893.4653
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.821893.4653macaca_fascicularisENSMFAP0000006413097.821893.4653
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.821893.4653macaca_nemestrinaENSMNEP0000003504197.821893.4653
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.821893.4653papio_anubisENSPANP0000001320397.821893.4653
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.821893.6634mandrillus_leucophaeusENSMLEP0000003260597.821893.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614gorilla_gorillaENSGGOP0000001112098.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614pan_paniscusENSPPAP0000001092198.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614pan_troglodytesENSPTRP0000002460598.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614pongo_abeliiENSPPYP0000001310998.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801593.465389.1089canis_lupus_familiarisENSCAFP0084501566694.969890.5433
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801595.643689.901canis_lupus_familiarisENSCAFP0084502837995.643689.901
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614vulpes_vulpesENSVVUP0000003231998.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614ursus_americanusENSUAMP0000002960198.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614mustela_putorius_furoENSMPUP0000001218898.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614homo_sapiensENSP0000021603898.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801544.158442.5743ailuropoda_melanoleucaENSAMEP0000003713497.379993.8865
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614ailuropoda_melanoleucaENSAMEP0000001706498.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801591.287186.1386tursiops_truncatusENSTTRP0000000607398.085192.5532
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614felis_catusENSFCAP0000002494398.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614panthera_leoENSPLOP0000003047998.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614panthera_pardusENSPPRP0000000965898.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.4653physeter_catodonENSPCTP0000500771198.217893.4653
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.0693delphinapterus_leucasENSDLEP0000000796798.019893.0693
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.4653balaenoptera_musculusENSBMSP0001001133698.217893.4653
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.2673loxodonta_africanaENSLAFP0000000174198.019893.2673
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217894.0594equus_caballusENSECAP0000008551589.208685.4317
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217894.0594equus_asinusENSEASP0000502804698.217894.0594
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801576.237672.2772procavia_capensisENSPCAP0000001275582.441178.1585
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.6634camelus_dromedariusENSCDRP0000502341498.019893.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614sus_scrofaENSSSCP0000000016598.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.8614bos_taurusENSBTAP0000001469998.019893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801570.693168.1188ochotona_princepsENSOPRP0000000321276.445473.6617
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614ovis_aries_rambouilletENSOARP0002002443598.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801522.574320.198capra_hircusENSCHIP0000002633784.444475.5556
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614capra_hircusENSCHIP0000003343398.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801536.039632.2772capra_hircusENSCHIP0000001770287.578.3654
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801592.277284.9505oryctolagus_cuniculusENSOCUP0000002895249.786345.8333
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019894.0594dipodomys_ordiiENSDORP0000001020498.019894.0594
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.4653marmota_marmota_marmotaENSMMMP0000001917698.019893.4653
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.4653urocitellus_parryiiENSUPAP0001000186898.019893.4653
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.821893.8614cricetulus_griseus_chok1gshdENSCGRP0000100900497.821893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.8614mus_caroliMGP_CAROLIEiJ_P002434198.019893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801557.821856.2376mesocricetus_auratusENSMAUP0000000632597.658994.9833
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.8614mus_musculusENSMUSP0000000183498.019893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.8614mus_pahariMGP_PahariEiJ_P008832398.019893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.8614mus_spretusMGP_SPRETEiJ_P002552598.019893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801595.247590.099rattus_norvegicusENSRNOP0000009366595.247590.099
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801578.217874.6535rattus_norvegicusENSRNOP0000007641995.180790.8434
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.8614mus_spicilegusENSMSIP0000003263798.019893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801573.069370.8911octodon_degusENSODEP0000001767397.87894.9602
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801569.70361.9802octodon_degusENSODEP0000000674186.274576.7157
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.6634heterocephalus_glaber_femaleENSHGLP0000000615193.572889.414
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.415894.4554monodelphis_domesticaENSMODP0000000171698.415894.4554
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801589.108985.3465pelodiscus_sinensisENSPSIP0000001298597.826193.6957
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.425794.4554erpetoichthys_calabaricusENSECRP0000001179697.425794.4554
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801594.257489.3069bos_grunniensENSBGRP0000002202764.150960.7817
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614ursus_maritimusENSUMAP0000002366998.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.029793.2673anolis_carolinensisENSACAP0000001461697.029793.2673
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.415894.4554vombatus_ursinusENSVURP0001000640498.415894.4554
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.6634vicugna_pacosENSVPAP0000000499298.019893.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.6634microcebus_murinusENSMICP0000001213198.217893.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801580.792174.6535microcebus_murinusENSMICP0000002284691.685484.7191
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.8614bos_indicus_hybridENSBIXP0000502061098.019893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.415893.4653otolemur_garnettiiENSOGAP0000000126898.415893.4653
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.821893.4653chinchilla_lanigeraENSCLAP0000001160197.821893.4653
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801584.356480.7921naja_najaENSNNAP0000001839893.013189.083
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801594.653590.495naja_najaENSNNAP0000001550797.352393.0754
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801585.148580.7921tupaia_belangeriENSTBEP0000000380885.487181.1133
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801594.455489.1089saimiri_boliviensis_boliviensisENSSBOP0000000630295.975990.5433
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801592.277288.7129phascolarctos_cinereusENSPCIP0000001184698.312294.5148
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801567.524761.5842aotus_nancymaaeENSANAP0000001154086.111178.5354
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801585.940678.8119aotus_nancymaaeENSANAP0000000244782.824475.9542
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.0693monodon_monocerosENSMMNP0001502449598.019893.0693
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801549.90148.7129sorex_araneusENSSARP0000000436553.164651.8987
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.4653ictidomys_tridecemlineatusENSSTOP0000000348398.019893.4653
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.8614bison_bison_bisonENSBBBP0000000897598.019893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.0693phocoena_sinusENSPSNP0000001076898.019893.0693
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614catagonus_wagneriENSCWAP0000002750398.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801583.762479.604geospiza_fortisENSGFOP0000001208195.485390.7449
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019894.0594jaculus_jaculusENSJJAP0000000583998.019894.0594
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801589.70380.5941ciona_savignyiENSCSAVP0000001385289.173280.1181
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.6634sciurus_vulgarisENSSVLP0000501896298.019893.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801596.237691.2871myotis_lucifugusENSMLUP0000000712695.85890.927
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.821894.2574taeniopygia_guttataENSTGUP0000001129197.821894.2574
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801590.693185.5446rhinopithecus_bietiENSRBIP0000003701594.628189.2562
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.821893.4653chlorocebus_sabaeusENSCSAP0000000460397.821893.4653
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801532.277229.703rhinopithecus_roxellanaENSRROP0000000521086.702179.7872
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.821894.2574ficedula_albicollisENSFALP0000001391697.821894.2574
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.623893.4653rhinolophus_ferrumequinumENSRFEP0001001138497.623893.4653
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614nomascus_leucogenysENSNLEP0000000610398.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801557.623854.8515hucho_huchoENSHHUP0000006900188.181883.9394
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.425792.6733podarcis_muralisENSPMRP0000001540697.425792.6733
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.425793.0693bos_mutusENSBMUP0000000518498.00893.6255
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.6634moschus_moschiferusENSMMSP0000002611898.217893.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801590.29786.3366panthera_tigris_altaicaENSPTIP0000002439595.798391.5966
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801524.158421.5842oncorhynchus_tshawytschaENSOTSP0000508227768.156460.8939
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.425793.6634coturnix_japonicaENSCJPP0000502289497.425793.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019894.2574microtus_ochrogasterENSMOCP0000000305998.019894.2574
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217894.0594cervus_hanglu_yarkandensisENSCHYP0000001206398.217894.0594
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801596.831792.0792salvator_merianaeENSSMRP0000002040496.831792.0792
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.6634propithecus_coquereliENSPCOP0000001146398.019893.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.425793.6634anser_brachyrhynchusENSABRP0000000462097.425793.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.425792.6733gopherus_evgoodeiENSGEVP0000502699397.425792.6733
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801566.930764.5545nannospalax_galiliENSNGAP0000000406497.687994.2197
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.623893.0693chelonoidis_abingdoniiENSCABP0000001731397.623893.0693
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801583.366377.8218canis_lupus_dingoENSCAFP0002002408695.464989.1156
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614canis_lupus_dingoENSCAFP0002000600498.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801594.851590.099prolemur_simusENSPSMP0000001433594.851590.099
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217894.4554leptobrachium_leishanenseENSLLEP0000003881298.217894.4554
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801587.722884.1584struthio_camelus_australisENSSCUP0000002310493.855990.0424
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.6634cebus_imitatorENSCCAP0000000016798.019893.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801586.930782.3762cyprinus_carpio_carpioENSCCRP0000014696989.227684.5528
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.623893.0693terrapene_carolina_triunguisENSTMTP0000002251097.623893.0693
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801591.089186.3366pteropus_vampyrusENSPVAP0000000224898.290693.1624
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614neovison_visonENSNVIP0000003172598.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.217893.8614carlito_syrichtaENSTSYP0000001130398.217893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.425793.6634strigops_habroptilaENSSHBP0000500206497.425793.6634
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801598.019893.8614peromyscus_maniculatus_bairdiiENSPEMP0000002207998.019893.8614
ENSSFOG00015011572scleropages_formosusENSSFOP0001501801597.425793.6634aquila_chrysaetos_chrysaetosENSACCP0002000988597.425793.6634

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression