| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSSAUG00010025085 | Gene ID |
115592860 |
Accession |
- |
| Symbol |
tpm2 |
Alias |
- |
Full Name |
tropomyosin beta chain |
| Status |
Confidence |
Length |
30507 bases |
Strand |
Plus strand |
| Position |
12 : 538918 - 569424 |
RNA binding domain |
Tropomyosin |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSSAUP00010062165 |
Tropomyosin |
PF00261 |
4.6e-93 |
1 |
| ENSSAUP00010062260 |
Tropomyosin |
PF00261 |
6.3e-93 |
1 |
| ENSSAUP00010062159 |
Tropomyosin |
PF00261 |
7e-93 |
1 |
| ENSSAUP00010062257 |
Tropomyosin |
PF00261 |
6.6e-90 |
1 |
| ENSSAUP00010062279 |
Tropomyosin |
PF00261 |
2.1e-86 |
1 |
| ENSSAUP00010062265 |
Tropomyosin |
PF00261 |
2e-80 |
1 |
| ENSSAUP00010062265 |
Tropomyosin |
PF00261 |
2e-80 |
2 |
| ENSSAUP00010062264 |
Tropomyosin |
PF00261 |
2.8e-77 |
1 |
| ENSSAUP00010062264 |
Tropomyosin |
PF00261 |
2.8e-77 |
2 |
| ENSSAUP00010062262 |
Tropomyosin |
PF00261 |
5.4e-77 |
1 |
| ENSSAUP00010062262 |
Tropomyosin |
PF00261 |
5.4e-77 |
2 |
| ENSSAUP00010062267 |
Tropomyosin |
PF00261 |
3.4e-76 |
1 |
| ENSSAUP00010062267 |
Tropomyosin |
PF00261 |
3.4e-76 |
2 |
| ENSSAUP00010062308 |
Tropomyosin |
PF00261 |
1.5e-71 |
1 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| tpm2-201 |
ENSSAUT00010065190 |
1199 |
290aa |
ENSSAUP00010062159 |
| tpm2-202 |
ENSSAUT00010065196 |
1241 |
304aa |
ENSSAUP00010062165 |
| tpm2-203 |
ENSSAUT00010065288 |
1267 |
284aa |
ENSSAUP00010062257 |
| tpm2-204 |
ENSSAUT00010065291 |
1267 |
284aa |
ENSSAUP00010062260 |
| tpm2-205 |
ENSSAUT00010065293 |
1246 |
277aa |
ENSSAUP00010062262 |
| tpm2-206 |
ENSSAUT00010065295 |
1240 |
275aa |
ENSSAUP00010062264 |
| tpm2-207 |
ENSSAUT00010065296 |
1225 |
270aa |
ENSSAUP00010062265 |
| tpm2-208 |
ENSSAUT00010065298 |
1189 |
258aa |
ENSSAUP00010062267 |
| tpm2-209 |
ENSSAUT00010065310 |
1058 |
247aa |
ENSSAUP00010062279 |
| tpm2-210 |
ENSSAUT00010065339 |
1322 |
244aa |
ENSSAUP00010062308 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010067483 | 45.9259 | 42.4074 | sparus_aurata | ENSSAUP00010062165 | 81.5789 | 75.3289 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010026361 | 84.3648 | 77.8502 | sparus_aurata | ENSSAUP00010062165 | 85.1974 | 78.6184 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010018306 | 75.9036 | 60.241 | sparus_aurata | ENSSAUP00010062165 | 62.1711 | 49.3421 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010054122 | 62.2739 | 56.5891 | sparus_aurata | ENSSAUP00010062165 | 79.2763 | 72.0395 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010037154 | 83.6066 | 77.3771 | sparus_aurata | ENSSAUP00010062165 | 83.8816 | 77.6316 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010011445 | 75.5627 | 70.0965 | sparus_aurata | ENSSAUP00010062165 | 77.3026 | 71.7105 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 71.7105 | 70.0658 | poecilia_reticulata | ENSPREP00000020660 | 87.9032 | 85.8871 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 88.4868 | 87.5 | fundulus_heteroclitus | ENSFHEP00000007712 | 94.7183 | 93.662 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 84.2105 | 80.5921 | xiphophorus_maculatus | ENSXMAP00000037875 | 90.1408 | 86.2676 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 88.8158 | 87.5 | oryzias_latipes | ENSORLP00000016394 | 95.0704 | 93.662 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 89.4737 | 89.1447 | cyclopterus_lumpus | ENSCLMP00005047265 | 95.7747 | 95.4225 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 88.4868 | 87.5 | cyprinodon_variegatus | ENSCVAP00000031630 | 94.7183 | 93.662 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 74.6711 | 71.3816 | seriola_dumerili | ENSSDUP00000029331 | 77.4744 | 74.0614 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 82.5658 | 80.2632 | amphilophus_citrinellus | ENSACIP00000015765 | 80.4487 | 78.2051 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 67.1053 | 66.1184 | poecilia_latipinna | ENSPLAP00000029941 | 86.076 | 84.8101 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 77.6316 | 74.0132 | lates_calcarifer | ENSLCAP00010048502 | 81.0997 | 77.3196 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 88.4868 | 87.5 | poecilia_formosa | ENSPFOP00000005385 | 94.7183 | 93.662 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 88.8158 | 87.8289 | kryptolebias_marmoratus | ENSKMAP00000021105 | 95.0704 | 94.0141 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 82.5658 | 80.9211 | dicentrarchus_labrax | ENSDLAP00005003552 | 84.2282 | 82.5503 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 84.2105 | 80.5921 | cynoglossus_semilaevis | ENSCSEP00000029181 | 90.1408 | 86.2676 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 89.1447 | 87.8289 | oryzias_sinensis | ENSOSIP00000032507 | 89.1447 | 87.8289 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 85.5263 | 81.5789 | anabas_testudineus | ENSATEP00000038897 | 73.2394 | 69.8592 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 84.5395 | 81.9079 | cottoperca_gobio | ENSCGOP00000036765 | 83.7134 | 81.1075 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 88.8158 | 87.5 | betta_splendens | ENSBSLP00000033728 | 86.262 | 84.984 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 89.4737 | 87.8289 | oryzias_melastigma | ENSOMEP00000016452 | 91.2752 | 89.5973 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 84.8684 | 81.9079 | sander_lucioperca | ENSSLUP00000036882 | 90.8451 | 87.6761 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 66.7763 | 66.1184 | tetraodon_nigroviridis | ENSTNIP00000004202 | 99.5098 | 98.5294 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 88.8158 | 86.8421 | mastacembelus_armatus | ENSMAMP00000049790 | 89.701 | 87.7076 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 89.1447 | 87.8289 | oryzias_javanicus | ENSOJAP00000009898 | 95.4225 | 94.0141 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 84.8684 | 81.5789 | amphiprion_percula | ENSAPEP00000020383 | 90.8451 | 87.3239 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 89.8026 | 88.8158 | takifugu_rubripes | ENSTRUP00000087054 | 88.3495 | 87.3786 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 88.4868 | 87.5 | neolamprologus_brichardi | ENSNBRP00000001352 | 94.7183 | 93.662 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 73.6842 | 71.7105 | nothobranchius_furzeri | ENSNFUP00015001075 | 66.0767 | 64.3068 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 54.2763 | 53.6184 | pundamilia_nyererei | ENSPNYP00000008801 | 92.6966 | 91.573 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 82.8947 | 80.5921 | stegastes_partitus | ENSSPAP00000020122 | 83.4437 | 81.1258 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 82.8947 | 79.9342 | larimichthys_crocea | ENSLCRP00005059092 | 84.2809 | 81.2709 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 64.4737 | 49.3421 | caenorhabditis_elegans | Y105E8B.1d.1 | 69.0141 | 52.8169 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 60.5263 | 40.7895 | drosophila_melanogaster | FBpp0089270 | 64.7887 | 43.662 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 64.1447 | 47.0395 | drosophila_melanogaster | FBpp0088904 | 27.4262 | 20.1125 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 44.0789 | 25.3289 | ciona_intestinalis | ENSCINP00000017815 | 55.3719 | 31.8182 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 83.8816 | 77.6316 | latimeria_chalumnae | ENSLACP00000013046 | 89.7887 | 83.0986 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 88.1579 | 86.8421 | danio_rerio | ENSDARP00000132881 | 94.3662 | 92.9577 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 84.2105 | 79.6053 | carassius_auratus | ENSCARP00000068769 | 90.1408 | 85.2113 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 88.4868 | 86.5132 | carassius_auratus | ENSCARP00000135942 | 94.7183 | 92.6056 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 88.8158 | 87.5 | astyanax_mexicanus | ENSAMXP00000010441 | 95.0704 | 93.662 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 88.8158 | 86.8421 | ictalurus_punctatus | ENSIPUP00000002251 | 89.701 | 87.7076 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 83.5526 | 79.6053 | electrophorus_electricus | ENSEEEP00000043491 | 89.4366 | 85.2113 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 84.8684 | 81.9079 | oncorhynchus_mykiss | ENSOMYP00000021392 | 80.3738 | 77.5701 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 67.4342 | 61.5132 | oncorhynchus_kisutch | ENSOKIP00005115927 | 70.6897 | 64.4828 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 85.1974 | 81.9079 | salmo_salar | ENSSSAP00000086040 | 84.918 | 81.6393 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 84.2105 | 80.9211 | salmo_trutta | ENSSTUP00000042574 | 85.906 | 82.5503 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 89.1447 | 87.5 | gadus_morhua | ENSGMOP00000067243 | 95.4225 | 93.662 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 17.4342 | 17.1053 | ailuropoda_melanoleuca | ENSAMEP00000041015 | 100 | 98.1132 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 69.7368 | 57.5658 | ciona_savignyi | ENSCSAVP00000018448 | 74.386 | 61.4035 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 60.5263 | 46.0526 | ciona_savignyi | ENSCSAVP00000006827 | 71.3178 | 54.2636 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 72.3684 | 62.8289 | ciona_savignyi | ENSCSAVP00000007166 | 77.4648 | 67.2535 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 89.1447 | 87.1711 | scleropages_formosus | ENSSFOP00015047391 | 95.4225 | 93.3099 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 89.4737 | 86.8421 | cyprinus_carpio_carpio | ENSCCRP00000050857 | 79.3003 | 76.9679 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 85.1974 | 79.6053 | cyprinus_carpio_carpio | ENSCCRP00000003924 | 75.5102 | 70.5539 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 89.1447 | 88.8158 | oncorhynchus_tshawytscha | ENSOTSP00005098654 | 95.4225 | 95.0704 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 69.7368 | 64.1447 | strigops_habroptila | ENSSHBP00005006331 | 85.4839 | 78.629 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 16.1184 | 15.4605 | pan_paniscus | ENSPPAP00000012827 | 89.0909 | 85.4545 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 76.9737 | 75 | sinocyclocheilus_grahami | ENSSGRP00000068532 | 88.6364 | 86.3636 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 68.4211 | 61.5132 | denticeps_clupeoides | ENSDCDP00000039539 | 60.2899 | 54.2029 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 72.0395 | 70.0658 | pygocentrus_nattereri | ENSPNAP00000032844 | 88.3064 | 85.8871 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 84.2105 | 80.9211 | myripristis_murdjan | ENSMMDP00005013986 | 90.1408 | 86.6197 |
| ENSSAUG00010025085 | sparus_aurata | ENSSAUP00010062165 | 85.8553 | 82.8947 | erpetoichthys_calabaricus | ENSECRP00000010129 | 91.9014 | 88.7324 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
