RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSAUG00010005167	Gene ID	115579373	Accession	-
Symbol		Alias	-	Full Name	tropomyosin alpha-3 chain
Status	Confidence	Length	20654 bases	Strand	Minus strand
Position	3 : 31399540 - 31420193	RNA binding domain	Tropomyosin
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSAUP00010011432	Tropomyosin	PF00261	8.2e-98	1
ENSSAUP00010011424	Tropomyosin	PF00261	9.9e-98	1
ENSSAUP00010011447	Tropomyosin	PF00261	4.5e-88	1
ENSSAUP00010011441	Tropomyosin	PF00261	1.5e-87	1
ENSSAUP00010011445	Tropomyosin	PF00261	1.7e-87	1
ENSSAUP00010011442	Tropomyosin	PF00261	2e-87	1
ENSSAUP00010011436	Tropomyosin	PF00261	2.1e-87	1
ENSSAUP00010011437	Tropomyosin	PF00261	2.1e-87	1
ENSSAUP00010011444	Tropomyosin	PF00261	7.3e-87	1
ENSSAUP00010011449	Tropomyosin	PF00261	3.6e-67	1
ENSSAUP00010011449	Tropomyosin	PF00261	3.6e-67	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSAUT00010012154	1250	284aa	ENSSAUP00010011424
-	ENSSAUT00010012162	879	292aa	ENSSAUP00010011432
-	ENSSAUT00010012166	949	286aa	ENSSAUP00010011436
-	ENSSAUT00010012167	955	288aa	ENSSAUP00010011437
-	ENSSAUT00010012171	898	269aa	ENSSAUP00010011441
-	ENSSAUT00010012172	940	283aa	ENSSAUP00010011442
-	ENSSAUT00010012174	997	302aa	ENSSAUP00010011444
-	ENSSAUT00010012175	1024	311aa	ENSSAUP00010011445
-	ENSSAUT00010012177	901	270aa	ENSSAUP00010011447
-	ENSSAUT00010012179	973	294aa	ENSSAUP00010011449

Gene Model

Click here to download ENSSAUG00010005167's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSAUG00010005167's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010018306	75.9036	59.4378	sparus_aurata	ENSSAUP00010011445	60.7717	47.5884
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010054122	65.6331	60.9819	sparus_aurata	ENSSAUP00010011445	81.672	75.8842
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010037154	80.9836	75.7377	sparus_aurata	ENSSAUP00010011445	79.4212	74.2765
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010067483	46.6667	42.2222	sparus_aurata	ENSSAUP00010011445	81.0289	73.3119
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010062165	77.3026	71.7105	sparus_aurata	ENSSAUP00010011445	75.5627	70.0965
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010026361	79.4788	70.684	sparus_aurata	ENSSAUP00010011445	78.4566	69.7749

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	81.3505	poecilia_reticulata	ENSPREP00000018531	90.1408	89.0845
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.6367	81.3505	fundulus_heteroclitus	ENSFHEP00000013254	79.5666	78.3282
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.672	80.7074	oryzias_latipes	ENSORLP00000013756	89.1228	88.0702
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	81.9936	cyclopterus_lumpus	ENSCLMP00005006869	90.1408	89.7887
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.9936	81.0289	oreochromis_niloticus	ENSONIP00000012997	83.6066	82.6229
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.6367	81.3505	cyprinodon_variegatus	ENSCVAP00000019619	90.493	89.0845
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.6367	82.3151	amphiprion_ocellaris	ENSAOCP00000004431	90.493	90.1408
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.6367	81.9936	seriola_dumerili	ENSSDUP00000013280	90.493	89.7887
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.9936	80.7074	amphilophus_citrinellus	ENSACIP00000010732	89.7887	88.3803
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	81.3505	poecilia_latipinna	ENSPLAP00000016057	90.1408	89.0845
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	84.5659	83.9228	lates_calcarifer	ENSLCAP00010017194	91.958	91.2587
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	81.3505	poecilia_formosa	ENSPFOP00000016674	90.1408	89.0845
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	77.1704	74.5981	maylandia_zebra	ENSMZEP00005034956	84.507	81.6901
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.9936	80.3858	maylandia_zebra	ENSMZEP00005023318	89.7887	88.0282
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	22.508	22.1865	seriola_lalandi_dorsalis	ENSSLDP00000013061	86.4198	85.1852
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	84.2444	83.6013	seriola_lalandi_dorsalis	ENSSLDP00000000635	95.9707	95.2381
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	22.508	22.1865	seriola_lalandi_dorsalis	ENSSLDP00000005918	86.4198	85.1852
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	81.3505	kryptolebias_marmoratus	ENSKMAP00000000949	90.1408	89.0845
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.9936	80.3858	astatotilapia_calliptera	ENSACLP00000025534	89.7887	88.0282
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	81.672	dicentrarchus_labrax	ENSDLAP00005057929	76.6467	76.0479
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.9936	81.672	scophthalmus_maximus	ENSSMAP00000047593	89.7887	89.4366
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.9936	81.3505	gasterosteus_aculeatus	ENSGACP00000001689	88.8502	88.1533
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.6367	82.3151	cynoglossus_semilaevis	ENSCSEP00000029005	90.493	90.1408
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	86.1736	84.8875	oryzias_sinensis	ENSOSIP00000036870	86.4516	85.1613
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	81.672	anabas_testudineus	ENSATEP00000019075	78.2875	77.6758
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	83.9228	81.3505	cottoperca_gobio	ENSCGOP00000019013	91.9014	89.0845
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.6367	81.672	hippocampus_comes	ENSHCOP00000001792	90.493	89.4366
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	78.7781	78.135	betta_splendens	ENSBSLP00000019863	89.7436	89.011
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	81.672	oryzias_melastigma	ENSOMEP00000007663	90.1408	89.4366
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	81.672	sander_lucioperca	ENSSLUP00000001334	90.1408	89.4366
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.6367	82.3151	acanthochromis_polyacanthus	ENSAPOP00000017736	90.493	90.1408
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	83.6013	82.9582	mastacembelus_armatus	ENSMAMP00000030277	73.0337	72.4719
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	83.6013	82.6367	oryzias_javanicus	ENSOJAP00000011811	87.5421	86.532
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.9936	80.3858	haplochromis_burtoni	ENSHBUP00000005845	89.7887	88.0282
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.9936	80.3858	labrus_bergylta	ENSLBEP00000031429	90.106	88.3392
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.6367	82.3151	amphiprion_percula	ENSAPEP00000012967	90.493	90.1408
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	85.209	82.6367	takifugu_rubripes	ENSTRUP00000078331	74.6479	72.3944
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	21.2219	20.9003	neolamprologus_brichardi	ENSNBRP00000023034	88	86.6667
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	27.6527	25.0804	neolamprologus_brichardi	ENSNBRP00000023063	91.4894	82.9787
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	19.6141	19.6141	neolamprologus_brichardi	ENSNBRP00000023050	98.3871	98.3871
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.6367	81.672	nothobranchius_furzeri	ENSNFUP00015047641	90.493	89.4366
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.6367	81.3505	pundamilia_nyererei	ENSPNYP00000026173	91.1348	89.7163
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.6367	81.9936	stegastes_partitus	ENSSPAP00000007404	90.493	89.7887
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.6367	82.3151	larimichthys_crocea	ENSLCRP00005037721	82.6367	82.3151
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	62.0579	48.5531	caenorhabditis_elegans	Y105E8B.1d.1	67.9577	53.169
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	57.2347	39.5498	drosophila_melanogaster	FBpp0089270	62.6761	43.3099
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	62.0579	46.9453	drosophila_melanogaster	FBpp0088904	27.1449	20.5345
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	54.3408	44.373	eptatretus_burgeri	ENSEBUP00000000317	74.7788	61.0619
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	78.7781	74.2765	latimeria_chalumnae	ENSLACP00000003198	85.6643	80.7692
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	64.3087	58.1994	lepisosteus_oculatus	ENSLOCP00000009041	71.6846	64.8745
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.3505	78.7781	clupea_harengus	ENSCHAP00000042650	89.0845	86.2676
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	83.2797	79.4212	danio_rerio	ENSDARP00000125941	91.1972	86.9718
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.9582	80.7074	carassius_auratus	ENSCARP00000118925	85.1485	82.8383
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	79.7428	carassius_auratus	ENSCARP00000066756	88.5813	85.8131
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	83.2797	79.7428	ictalurus_punctatus	ENSIPUP00000015178	76.8546	73.5905
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	83.2797	79.7428	electrophorus_electricus	ENSEEEP00000037061	91.1972	87.3239
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	79.0997	esox_lucius	ENSELUP00000013052	74.8538	71.9298
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.672	79.4212	oncorhynchus_mykiss	ENSOMYP00000066735	87.5862	85.1724
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	83.6013	80.7074	oncorhynchus_mykiss	ENSOMYP00000027350	85.2459	82.2951
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.6367	80.0643	oncorhynchus_kisutch	ENSOKIP00005064867	85.0993	82.4503
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	86.8167	81.672	salmo_salar	ENSSSAP00000014448	68.3544	64.3038
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.9936	79.4212	salmo_salar	ENSSSAP00000020257	75.4438	73.0769
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	79.4212	75.5627	salmo_trutta	ENSSTUP00000106514	77.1875	73.4375
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	79.7428	salmo_trutta	ENSSTUP00000063872	76.1905	73.8095
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	75.5627	73.3119	gadus_morhua	ENSGMOP00000035660	81.0345	78.6207
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	68.1672	58.5209	ciona_savignyi	ENSCSAVP00000018448	74.386	63.8596
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	54.0193	41.1576	ciona_savignyi	ENSCSAVP00000006827	65.1163	49.6124
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	71.3826	63.6656	ciona_savignyi	ENSCSAVP00000007166	78.169	69.7183
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	78.4566	73.6334	scleropages_formosus	ENSSFOP00015061601	85.614	80.3509
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	85.209	81.3505	scleropages_formosus	ENSSFOP00015048556	88.9262	84.8993
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	87.7813	83.2797	cyprinus_carpio_carpio	ENSCCRP00000018857	81.982	77.7778
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	83.2797	79.7428	cyprinus_carpio_carpio	ENSCCRP00000139497	91.1972	87.3239
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	79.4212	oncorhynchus_tshawytscha	ENSOTSP00005082941	80.7571	77.918
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.9936	79.4212	paramormyrops_kingsleyae	ENSPKIP00000037452	89.7887	86.9718
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	86.8167	81.3505	hucho_hucho	ENSHHUP00000033615	68.7023	64.3766
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.672	79.4212	hucho_hucho	ENSHHUP00000037230	71.5493	69.5775
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	80.7074	sinocyclocheilus_grahami	ENSSGRP00000072997	89.5105	87.7622
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	85.5305	81.0289	sinocyclocheilus_grahami	ENSSGRP00000086629	90.4762	85.7143
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.9936	80.0643	denticeps_clupeoides	ENSDCDP00000016389	88.5417	86.4583
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	83.6013	80.0643	pygocentrus_nattereri	ENSPNAP00000004484	77.1513	73.8872
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	82.3151	81.672	myripristis_murdjan	ENSMMDP00005022366	90.1408	89.4366
ENSSAUG00010005167	sparus_aurata	ENSSAUP00010011445	81.672	79.4212	erpetoichthys_calabaricus	ENSECRP00000013262	89.1228	86.6667

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression