RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSRFEG00010001023	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	273 bases	Strand	Plus strand
Position	1 : 26278074 - 26278346	RNA binding domain	SMN
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSRFEP00010001368	SMN	PF06003	1.4e-11	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSRFET00010001509	195	64aa	ENSRFEP00010001368

Gene Model

Click here to download ENSRFEG00010001023's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSRFEG00010001023's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSRFEG00010001023

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSRFEG00010001023	rhinolophus_ferrumequinum	ENSRFEP00010001368	75	68.75	macaca_fascicularis	ENSMFAP00000017005	39.3443	36.0656
ENSRFEG00010001023	rhinolophus_ferrumequinum	ENSRFEP00010001368	65.625	56.25	macaca_mulatta	ENSMMUP00000050154	48.2759	41.3793
ENSRFEG00010001023	rhinolophus_ferrumequinum	ENSRFEP00010001368	67.1875	62.5	macaca_nemestrina	ENSMNEP00000014655	42.1569	39.2157
ENSRFEG00010001023	rhinolophus_ferrumequinum	ENSRFEP00010001368	65.625	54.6875	balaenoptera_musculus	ENSBMSP00010024534	58.3333	48.6111
ENSRFEG00010001023	rhinolophus_ferrumequinum	ENSRFEP00010001368	56.25	48.4375	oryctolagus_cuniculus	ENSOCUP00000034014	26.8657	23.1343
ENSRFEG00010001023	rhinolophus_ferrumequinum	ENSRFEP00010001368	67.1875	59.375	cricetulus_griseus_chok1gshd	ENSCGRP00001008335	58.9041	52.0548
ENSRFEG00010001023	rhinolophus_ferrumequinum	ENSRFEP00010001368	68.75	64.0625	heterocephalus_glaber_female	ENSHGLP00000051036	26.3473	24.5509
ENSRFEG00010001023	rhinolophus_ferrumequinum	ENSRFEP00010001368	68.75	59.375	phascolarctos_cinereus	ENSPCIP00000019914	61.9718	53.5211
ENSRFEG00010001023	rhinolophus_ferrumequinum	ENSRFEP00010001368	59.375	50	phascolarctos_cinereus	ENSPCIP00000037460	40.8602	34.4086
ENSRFEG00010001023	rhinolophus_ferrumequinum	ENSRFEP00010001368	50	39.0625	prolemur_simus	ENSPSMP00000034115	31.068	24.2718
ENSRFEG00010001023	rhinolophus_ferrumequinum	ENSRFEP00010001368	65.625	59.375	carlito_syrichta	ENSTSYP00000016183	43.299	39.1753

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression