RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSPTXG00000010659	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	717 bases	Strand	Minus strand
Position	ULFR01000063.1 : 4389579 - 4390295	RNA binding domain	Transposase_22
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSPTXP00000015444	Transposase_22	PF02994	2.1e-08	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSPTXT00000015919	717	238aa	ENSPTXP00000015444

Gene Model

Click here to download ENSPTXG00000010659's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSPTXG00000010659's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPTXG00000010659	pseudonaja_textilis	ENSPTXP00000027109	58.9744	55.1282	pseudonaja_textilis	ENSPTXP00000015444	77.3109	72.2689
ENSPTXG00000010659	pseudonaja_textilis	ENSPTXP00000011513	65.3285	57.6642	pseudonaja_textilis	ENSPTXP00000015444	75.2101	66.3866
ENSPTXG00000010659	pseudonaja_textilis	ENSPTXP00000006081	45	26.5625	pseudonaja_textilis	ENSPTXP00000015444	60.5042	35.7143

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPTXG00000010659	pseudonaja_textilis	ENSPTXP00000015444	74.3698	66.3866	notechis_scutatus	ENSNSUP00000007090	66.0448	58.9552
ENSPTXG00000010659	pseudonaja_textilis	ENSPTXP00000015444	31.9328	25.6303	laticauda_laticaudata	ENSLLTP00000023678	89.4118	71.7647
ENSPTXG00000010659	pseudonaja_textilis	ENSPTXP00000015444	28.1513	22.6891	laticauda_laticaudata	ENSLLTP00000019208	76.1364	61.3636
ENSPTXG00000010659	pseudonaja_textilis	ENSPTXP00000015444	30.2521	25.6303	naja_naja	ENSNNAP00000027897	82.7586	70.1149
ENSPTXG00000010659	pseudonaja_textilis	ENSPTXP00000015444	30.2521	25.6303	naja_naja	ENSNNAP00000001000	82.7586	70.1149
ENSPTXG00000010659	pseudonaja_textilis	ENSPTXP00000015444	26.8908	22.6891	naja_naja	ENSNNAP00000009607	85.3333	72

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression