RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSPTXG00000004453	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1360 bases	Strand	Minus strand
Position	ULFR01000015.1 : 12131175 - 12132534	RNA binding domain	Transposase_22
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSPTXP00000006081	Transposase_22	PF02994	8e-05	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSPTXT00000006279	963	320aa	ENSPTXP00000006081

Gene Model

Click here to download ENSPTXG00000004453's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSPTXG00000004453's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000015444	60.5042	35.7143	pseudonaja_textilis	ENSPTXP00000006081	45	26.5625
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000027109	45.8333	24.0385	pseudonaja_textilis	ENSPTXP00000006081	44.6875	23.4375
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000011513	54.3796	28.8321	pseudonaja_textilis	ENSPTXP00000006081	46.5625	24.6875

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000006081	79.6875	62.1875	notechis_scutatus	ENSNSUP00000003458	67.8191	52.9255
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000006081	78.4375	60.625	notechis_scutatus	ENSNSUP00000020141	64.5244	49.8715
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000006081	40.3125	23.75	laticauda_laticaudata	ENSLLTP00000017180	59.7222	35.1852
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000006081	49.375	28.125	laticauda_laticaudata	ENSLLTP00000024481	54.2955	30.9278
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000006081	48.75	27.5	naja_naja	ENSNNAP00000002595	58.427	32.9588
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000006081	15.9375	8.75	naja_naja	ENSNNAP00000016383	57.9545	31.8182
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000006081	55	30	naja_naja	ENSNNAP00000009674	54.6584	29.8137
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000006081	32.1875	18.125	naja_naja	ENSNNAP00000016978	52.551	29.5918
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000006081	41.25	24.375	naja_naja	ENSNNAP00000006572	61.3953	36.2791
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000006081	58.4375	32.5	naja_naja	ENSNNAP00000012319	50.9537	28.3379
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000006081	56.25	30	naja_naja	ENSNNAP00000015872	52.4781	27.9883
ENSPTXG00000004453	pseudonaja_textilis	ENSPTXP00000006081	49.6875	28.125	naja_naja	ENSNNAP00000010328	52.649	29.8013

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression