RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSPSNG00000003131	Gene ID	116752142	Accession	-
Symbol		Alias	-	Full Name	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
Status	Confidence	Length	12204 bases	Strand	Plus strand
Position	3 : 11784744 - 11796947	RNA binding domain	LSM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSPSNP00000004180	LSM	PF01423	9.3e-17	1
ENSPSNP00000004201	LSM	PF01423	9.5e-14	1
ENSPSNP00000004194	LSM	PF01423	2.1e-11	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSPSNT00000004778	1040	139aa	ENSPSNP00000004180
-	ENSPSNT00000004793	779	231aa	ENSPSNP00000004194
-	ENSPSNT00000004800	915	125aa	ENSPSNP00000004201

Gene Model

Click here to download ENSPSNG00000003131's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSPSNG00000003131's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000007687	45.3846	40.7692	phocoena_sinus	ENSPSNP00000004194	25.5411	22.9437
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000000311	18.4211	10.5263	phocoena_sinus	ENSPSNP00000004194	12.1212	6.92641
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000021749	32.5397	19.8413	phocoena_sinus	ENSPSNP00000004194	17.7489	10.8225
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000014071	30.2521	18.4874	phocoena_sinus	ENSPSNP00000004194	15.5844	9.52381
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000007620	27.2727	15.4545	phocoena_sinus	ENSPSNP00000004194	12.987	7.35931

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.1385	ornithorhynchus_anatinus	ENSOANP00000011839	51.0791	46.7626
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.1385	sarcophilus_harrisii	ENSSHAP00000025498	51.0791	46.7626
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	23.8095	21.2121	notamacropus_eugenii	ENSMEUP00000012062	44.3548	39.5161
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	52.8139	51.0823	physeter_catodon	ENSPCTP00005029784	45.6929	44.1948
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	86.1472	84.4156	delphinapterus_leucas	ENSDLEP00000008057	69.0972	67.7083
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	32.9004	30.303	equus_asinus	ENSEASP00005057813	24.5955	22.6537
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	32.9004	30.303	equus_caballus	ENSECAP00000087319	24.5955	22.6537
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	28.1385	26.8398	rattus_norvegicus	ENSRNOP00000095698	44.5205	42.4658
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	24.2424	21.645	monodelphis_domestica	ENSMODP00000018808	45.1613	40.3226
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	24.6753	22.0779	vombatus_ursinus	ENSVURP00010019647	45.6	40.8
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.1385	phascolarctos_cinereus	ENSPCIP00000046906	51.0791	46.7626
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	27.7056	22.5108	caenorhabditis_elegans	F32A5.7.1	52.0325	42.2764
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	27.7056	24.2424	drosophila_melanogaster	FBpp0099642	41.5584	36.3636
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	28.1385	26.4069	ciona_intestinalis	ENSCINP00000024281	51.1811	48.0315
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.303	26.8398	eptatretus_burgeri	ENSEBUP00000005359	46.3576	41.0596
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.5714	latimeria_chalumnae	ENSLACP00000018003	50.7143	47.1429
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	29.0043	lepisosteus_oculatus	ENSLOCP00000002347	51.773	47.5177
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.5714	clupea_harengus	ENSCHAP00000040475	50.6944	45.8333
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	29.0043	27.7056	danio_rerio	ENSDARP00000037344	46.8531	44.7552
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	28.5714	carassius_auratus	ENSCARP00000013636	48.9796	44.898
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.5714	carassius_auratus	ENSCARP00000110775	47.973	44.5946
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	29.0043	27.7056	carassius_auratus	ENSCARP00000028187	46.8531	44.7552
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	28.5714	astyanax_mexicanus	ENSAMXP00000047689	50.7042	46.4789
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	28.5714	ictalurus_punctatus	ENSIPUP00000007808	50.7042	46.4789
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.5714	esox_lucius	ENSELUP00000034301	50.3448	45.5172
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	28.1385	electrophorus_electricus	ENSEEEP00000046402	49.6552	44.8276
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.5714	oncorhynchus_kisutch	ENSOKIP00005074863	48.9933	44.2953
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.5714	oncorhynchus_kisutch	ENSOKIP00005033646	46.4968	42.0382
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.5714	oncorhynchus_mykiss	ENSOMYP00000068603	49.6599	44.898
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	28.1385	23.8095	oncorhynchus_mykiss	ENSOMYP00000001621	44.8276	37.931
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	32.0346	29.0043	salmo_salar	ENSSSAP00000136925	49.3333	44.6667
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	28.1385	salmo_salar	ENSSSAP00000137832	36.5482	32.9949
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.5714	salmo_trutta	ENSSTUP00000015644	48.6667	44
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	28.1385	salmo_trutta	ENSSTUP00000016349	40.2235	36.3129
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.1385	gadus_morhua	ENSGMOP00000008276	48.6301	44.5205
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	20.7792	20.7792	fundulus_heteroclitus	ENSFHEP00000014760	81.3559	81.3559
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	32.9004	29.8701	poecilia_reticulata	ENSPREP00000016701	40.4255	36.7021
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	32.0346	29.0043	xiphophorus_maculatus	ENSXMAP00000032663	39.3617	35.6383
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.303	27.2727	oryzias_latipes	ENSORLP00000010535	48.6111	43.75
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	28.5714	cyclopterus_lumpus	ENSCLMP00005001117	37.8947	34.7368
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	27.7056	oreochromis_niloticus	ENSONIP00000016014	48.9796	43.5374
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	27.7056	haplochromis_burtoni	ENSHBUP00000007373	39.3443	34.9727
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	27.7056	astatotilapia_calliptera	ENSACLP00000033544	48.9796	43.5374
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	32.0346	28.1385	sparus_aurata	ENSSAUP00010022169	48.366	42.4837
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.5714	chrysemys_picta_bellii	ENSCPBP00000017659	51.4493	47.8261
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	29.8701	27.2727	crocodylus_porosus	ENSCPRP00005022617	30.2632	27.6316
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	27.7056	lates_calcarifer	ENSLCAP00010006876	47.3684	42.1053
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	27.7056	lates_calcarifer	ENSLCAP00010031303	47.0588	41.8301
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.303	27.7056	sphenodon_punctatus	ENSSPUP00000013198	45.1613	41.2903
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	29.8701	27.2727	laticauda_laticaudata	ENSLLTP00000011868	42.5926	38.8889
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.5714	xenopus_tropicalis	ENSXETP00000053581	23.0519	21.4286
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.303	27.7056	pseudonaja_textilis	ENSPTXP00000002790	50.3597	46.0432
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.1385	dicentrarchus_labrax	ENSDLAP00005071143	48.0263	42.7632
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	32.0346	29.0043	erpetoichthys_calabaricus	ENSECRP00000017407	51.7483	46.8531
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.1385	pelodiscus_sinensis	ENSPSIP00000013771	51.8248	47.4453
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	32.0346	28.5714	cyprinodon_variegatus	ENSCVAP00000008739	51.7483	46.1538
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	25.5411	22.0779	cyprinodon_variegatus	ENSCVAP00000018552	45.0382	38.9313
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.303	27.2727	oryzias_melastigma	ENSOMEP00000002654	48.6111	43.75
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	26.8398	24.6753	neolamprologus_brichardi	ENSNBRP00000029072	38.2716	35.1852
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	27.7056	takifugu_rubripes	ENSTRUP00000048509	49.6503	44.7552
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.303	27.7056	naja_naja	ENSNNAP00000012460	50.3597	46.0432
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	28.1385	kryptolebias_marmoratus	ENSKMAP00000006700	50	45.1389
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	32.4675	29.4372	poecilia_formosa	ENSPFOP00000000513	39.8936	36.1702
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.1385	seriola_dumerili	ENSSDUP00000013196	43.7126	38.9222
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.1385	cottoperca_gobio	ENSCGOP00000030293	48.9933	43.6242
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.1385	sander_lucioperca	ENSSLUP00000031371	49.6599	44.2177
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	28.1385	tetraodon_nigroviridis	ENSTNIP00000013090	50	45.1389
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	29.0043	27.2727	pygocentrus_nattereri	ENSPNAP00000010969	50	47.0149
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.1385	acanthochromis_polyacanthus	ENSAPOP00000023667	48.3444	43.0464
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.1385	cynoglossus_semilaevis	ENSCSEP00000025253	50	45.7746
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.1385	larimichthys_crocea	ENSLCRP00005054785	43.9759	39.1566
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.1385	seriola_lalandi_dorsalis	ENSSLDP00000008606	43.4524	38.6905
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.1385	amphiprion_percula	ENSAPEP00000008637	48.9933	43.6242
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.303	27.7056	salvator_merianae	ENSSMRP00000029856	50.3597	46.0432
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.1385	labrus_bergylta	ENSLBEP00000037416	48.9933	43.6242
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.5714	gopherus_evgoodei	ENSGEVP00005027110	51.4493	47.8261
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	27.7056	maylandia_zebra	ENSMZEP00005021901	49.3151	43.8356
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	28.5714	myripristis_murdjan	ENSMMDP00005027426	50.3497	46.1538
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.5714	chelonoidis_abingdonii	ENSCABP00000022154	51.4493	47.8261
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	32.9004	29.8701	poecilia_latipinna	ENSPLAP00000027560	53.1469	48.2517
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.303	27.2727	oryzias_javanicus	ENSOJAP00000020776	48.6111	43.75
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.1385	gasterosteus_aculeatus	ENSGACP00000010798	47.3333	43.3333
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	29.0043	paramormyrops_kingsleyae	ENSPKIP00000021955	51.773	47.5177
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.303	27.7056	mastacembelus_armatus	ENSMAMP00000009166	49.2958	45.0704
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	22.9437	12.987	saccharomyces_cerevisiae	YER112W	28.3422	16.0428
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.1385	stegastes_partitus	ENSSPAP00000015410	48.3444	43.0464
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	27.7056	nothobranchius_furzeri	ENSNFUP00015045575	49.6503	44.7552
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	26.8398	22.9437	scophthalmus_maximus	ENSSMAP00000069837	36.6864	31.3609
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.5714	hucho_hucho	ENSHHUP00000024442	49.6599	44.898
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.5714	hucho_hucho	ENSHHUP00000047961	48.6667	44
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	28.1385	amphiprion_ocellaris	ENSAOCP00000021542	48.6486	43.9189
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.5714	cyprinus_carpio_carpio	ENSCCRP00000082263	47.973	44.5946
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	29.0043	cyprinus_carpio_carpio	ENSCCRP00000145919	48.9796	45.5782
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.5714	oncorhynchus_tshawytscha	ENSOTSP00005053145	46.4968	42.0382
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.5714	oncorhynchus_tshawytscha	ENSOTSP00005066686	48.9933	44.2953
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	23.8095	22.5108	oryzias_sinensis	ENSOSIP00000042151	76.3889	72.2222
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	22.5108	22.0779	oryzias_sinensis	ENSOSIP00000003378	76.4706	75
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	27.7056	betta_splendens	ENSBSLP00000022904	36.3636	32.3232
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	22.0779	20.3463	sinocyclocheilus_grahami	ENSSGRP00000018739	50	46.0784
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	29.0043	27.7056	sinocyclocheilus_grahami	ENSSGRP00000086395	47.1831	45.0704
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	28.5714	hippocampus_comes	ENSHCOP00000006949	50.7042	46.4789
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.1385	leptobrachium_leishanense	ENSLLEP00000006399	51.0791	46.7626
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	27.7056	pundamilia_nyererei	ENSPNYP00000022236	49.3151	43.8356
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.5714	terrapene_carolina_triunguis	ENSTMTP00000016910	51.4493	47.8261
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.6017	28.1385	anabas_testudineus	ENSATEP00000065675	48.0263	42.7632
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	31.1688	28.1385	denticeps_clupeoides	ENSDCDP00000034638	50.7042	45.7746
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	30.7359	28.5714	scleropages_formosus	ENSSFOP00015032981	50.3546	46.8085
ENSPSNG00000003131	phocoena_sinus	ENSPSNP00000004194	27.2727	25.974	ciona_savignyi	ENSCSAVP00000014715	50.4	48

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression