RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSPSIG00000006533	Gene ID	102457330	Accession	-
Symbol		Alias	-	Full Name	pre-mRNA-processing factor 39-like
Status	Confidence	Length	48514 bases	Strand	Minus strand
Position	JH212639.1 : 644151 - 692664	RNA binding domain	Suf
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSPSIP00000007074	Suf	PF05843	1.1e-11	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSPSIT00000007115	7040	726aa	ENSPSIP00000007074

Gene Model

Click here to download ENSPSIG00000006533's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSPSIG00000006533's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000012148	68.8623	53.1437	pelodiscus_sinensis	ENSPSIP00000007074	63.3609	48.8981

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	20.7989	11.8457	drosophila_melanogaster	FBpp0288891	25.8562	14.726
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	49.7245	38.0165	eptatretus_burgeri	ENSEBUP00000012859	65.8759	50.365
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	57.5758	47.2452	latimeria_chalumnae	ENSLACP00000023462	81.6406	66.9922
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	94.6281	91.4601	chrysemys_picta_bellii	ENSCPBP00000033843	91.9679	88.8889
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	80.0275	71.6253	sphenodon_punctatus	ENSSPUP00000000623	65.9478	59.0238
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	41.0468	36.0882	laticauda_laticaudata	ENSLLTP00000024872	85.879	75.5043
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	78.2369	67.0799	notechis_scutatus	ENSNSUP00000023326	79.6634	68.3029
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	77.9614	67.2176	pseudonaja_textilis	ENSPTXP00000023769	79.0503	68.1564
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	17.9063	8.95317	saccharomyces_cerevisiae	YGR141W	27.8373	13.9186
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	17.7686	7.85124	saccharomyces_cerevisiae	YPR157W	27.6231	12.2056
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	94.0771	91.0468	terrapene_carolina_triunguis	ENSTMTP00000003432	94.7295	91.6782
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	67.6309	58.9532	aquila_chrysaetos_chrysaetos	ENSACCP00020018444	79.7078	69.4805
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	80.7163	70.7989	podarcis_muralis	ENSPMRP00000023864	79.1892	69.4595
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	76.7218	68.3196	strigops_habroptila	ENSSHBP00005023081	85.4295	76.0736
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	79.3388	69.5592	salvator_merianae	ENSSMRP00000013658	80	70.1389
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	73.416	63.6364	naja_naja	ENSNNAP00000007464	80.7576	70
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	93.9394	90.6336	gopherus_evgoodei	ENSGEVP00005011755	94.5908	91.2621
ENSPSIG00000006533	pelodiscus_sinensis	ENSPSIP00000007074	94.0771	90.6336	chelonoidis_abingdonii	ENSCABP00000003933	91.6778	88.3222

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression