RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSPREG00000019595	Gene ID	103478833	Accession	-
Symbol		Alias	-	Full Name	poly(A) binding protein cytoplasmic 1
Status	Confidence	Length	12023 bases	Strand	Plus strand
Position	LG16 : 32586457 - 32598479	RNA binding domain	PABP , RRM_5 , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSPREP00000029467	RRM_1	PF00076	8.3e-36	1
ENSPREP00000029467	RRM_1	PF00076	8.3e-36	2
ENSPREP00000030335	PABP	PF00658	9.5e-31	1
ENSPREP00000030335	RRM_5	PF13893	2e-07	2
ENSPREP00000030335	RRM_1	PF00076	2.3e-92	3
ENSPREP00000030335	RRM_1	PF00076	2.3e-92	4
ENSPREP00000030335	RRM_1	PF00076	2.3e-92	5
ENSPREP00000030335	RRM_1	PF00076	2.3e-92	6
ENSPREP00000030370	PABP	PF00658	9.8e-31	1
ENSPREP00000030370	RRM_5	PF13893	1.4e-07	2
ENSPREP00000030370	RRM_1	PF00076	1.7e-92	3
ENSPREP00000030370	RRM_1	PF00076	1.7e-92	4
ENSPREP00000030370	RRM_1	PF00076	1.7e-92	5
ENSPREP00000030370	RRM_1	PF00076	1.7e-92	6
ENSPREP00000030401	PABP	PF00658	1e-30	1
ENSPREP00000030401	RRM_5	PF13893	1.4e-07	2
ENSPREP00000030401	RRM_1	PF00076	1.5e-92	3
ENSPREP00000030401	RRM_1	PF00076	1.5e-92	4
ENSPREP00000030401	RRM_1	PF00076	1.5e-92	5
ENSPREP00000030401	RRM_1	PF00076	1.5e-92	6
ENSPREP00000030418	RRM_1	PF00076	1e-29	1
ENSPREP00000030418	RRM_1	PF00076	1e-29	2
ENSPREP00000030459	PABP	PF00658	7e-31	1
ENSPREP00000030459	RRM_5	PF13893	1e-07	2
ENSPREP00000030459	RRM_5	PF13893	1e-07	3
ENSPREP00000030459	RRM_1	PF00076	4.1e-86	4
ENSPREP00000030459	RRM_1	PF00076	4.1e-86	5
ENSPREP00000030459	RRM_1	PF00076	4.1e-86	6
ENSPREP00000030459	RRM_1	PF00076	4.1e-86	7
ENSPREP00000030516	RRM_1	PF00076	3.2e-47	1
ENSPREP00000030516	RRM_1	PF00076	3.2e-47	2

Showing 1 to 31 of 31 entries

Pubmed ID	Full Name	Cell	Author	Time	Doi
No data available in table

Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

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Search:

Name	Transcript ID	bp	Protein	Translation ID
pabpc1a-201	ENSPRET00000029800	831	276aa	ENSPREP00000029467
pabpc1a-202	ENSPRET00000030679	1920	639aa	ENSPREP00000030335
pabpc1a-203	ENSPRET00000030714	1824	607aa	ENSPREP00000030370
pabpc1a-204	ENSPRET00000030745	1779	592aa	ENSPREP00000030401
pabpc1a-205	ENSPRET00000030757	429	142aa	ENSPREP00000030418
pabpc1a-206	ENSPRET00000030803	1554	517aa	ENSPREP00000030459
pabpc1a-207	ENSPRET00000030861	684	227aa	ENSPREP00000030516

Showing 1 to 7 of 7 entries

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Gene Model

Click here to download ENSPREG00000019595's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download ENSPREG00000019595's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000016193	93.6908	88.959	poecilia_reticulata	ENSPREP00000030335	92.9577	88.2629
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000006642	33.4056	16.0521	poecilia_reticulata	ENSPREP00000030335	24.1002	11.5806
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000008615	38.3333	22.5	poecilia_reticulata	ENSPREP00000030335	21.5962	12.6761
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000016350	42.8161	24.4253	poecilia_reticulata	ENSPREP00000030335	23.3177	13.302
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000000998	41.5966	24.7899	poecilia_reticulata	ENSPREP00000030335	15.493	9.23318
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000010898	38.4298	23.9669	poecilia_reticulata	ENSPREP00000030335	14.554	9.07668
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000024772	38.0952	23.8095	poecilia_reticulata	ENSPREP00000030335	15.0235	9.38967
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000027989	35.0109	19.9125	poecilia_reticulata	ENSPREP00000030335	25.0391	14.241
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000002187	84.6645	76.1981	poecilia_reticulata	ENSPREP00000030335	82.9421	74.6479
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000023528	91.5049	81.068	poecilia_reticulata	ENSPREP00000030335	58.9984	52.2692

Showing 1 to 10 of 29 entries

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Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000030335	96.5571	95.4617	amphilophus_citrinellus	ENSACIP00000005967	97.1654	96.063
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000030335	97.8091	97.0266	poecilia_latipinna	ENSPLAP00000002773	98.4252	97.6378
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000030335	96.7136	95.7747	fundulus_heteroclitus	ENSFHEP00000017269	97.3228	96.378
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000030335	96.7136	95.7747	sparus_aurata	ENSSAUP00010022047	97.3228	96.378
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000030335	96.2441	95.1487	neolamprologus_brichardi	ENSNBRP00000003896	96.8504	95.748
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000030335	96.2441	94.9922	scophthalmus_maximus	ENSSMAP00000017682	96.8504	95.5906
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000030335	96.4006	95.3052	betta_splendens	ENSBSLP00000009108	97.0079	95.9055
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000030335	97.6526	96.8701	poecilia_formosa	ENSPFOP00000010987	96.4451	95.6723
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000030335	96.2441	95.3052	seriola_dumerili	ENSSDUP00000009090	96.8504	95.9055
ENSPREG00000019595	poecilia_reticulata	ENSPREP00000030335	96.4006	95.6182	dicentrarchus_labrax	ENSDLAP00005015174	97.1609	96.3722

Showing 1 to 10 of 179 entries

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression