RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSPPRG00000020051	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	180 bases	Strand	Minus strand
Position	KV860340.1 : 1933204 - 1933383	RNA binding domain	Ribosomal_S30
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSPPRP00000028102	Ribosomal_S30	PF04758	1.6e-17	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSPPRT00000029686	180	59aa	ENSPPRP00000028102

Gene Model

Click here to download ENSPPRG00000020051's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSPPRG00000020051's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPPRG00000020051

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPPRG00000020051	panthera_pardus	ENSPPRP00000028102	61.0169	45.7627	felis_catus	ENSFCAP00000054152	33.9623	25.4717
ENSPPRG00000020051	panthera_pardus	ENSPPRP00000028102	96.6102	93.2203	panthera_leo	ENSPLOP00000002804	96.6102	93.2203
ENSPPRG00000020051	panthera_pardus	ENSPPRP00000028102	67.7966	61.0169	equus_asinus	ENSEASP00005016231	71.4286	64.2857
ENSPPRG00000020051	panthera_pardus	ENSPPRP00000028102	64.4068	54.2373	capra_hircus	ENSCHIP00000003756	52.7778	44.4444
ENSPPRG00000020051	panthera_pardus	ENSPPRP00000028102	61.0169	54.2373	prolemur_simus	ENSPSMP00000035507	37.8947	33.6842
ENSPPRG00000020051	panthera_pardus	ENSPPRP00000028102	66.1017	57.6271	heterocephalus_glaber_female	ENSHGLP00000039557	54.9296	47.8873
ENSPPRG00000020051	panthera_pardus	ENSPPRP00000028102	62.7119	52.5424	heterocephalus_glaber_female	ENSHGLP00000044827	62.7119	52.5424
ENSPPRG00000020051	panthera_pardus	ENSPPRP00000028102	67.7966	62.7119	equus_caballus	ENSECAP00000031221	71.4286	66.0714
ENSPPRG00000020051	panthera_pardus	ENSPPRP00000028102	57.6271	49.1525	equus_caballus	ENSECAP00000033963	54.8387	46.7742
ENSPPRG00000020051	panthera_pardus	ENSPPRP00000028102	62.7119	54.2373	neovison_vison	ENSNVIP00000029698	64.9123	56.1404
ENSPPRG00000020051	panthera_pardus	ENSPPRP00000028102	61.0169	50.8475	oryctolagus_cuniculus	ENSOCUP00000046875	32.1429	26.7857

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression