RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSPPAG00000029238	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1067 bases	Strand	Plus strand
Position	1 : 144803060 - 144804126	RNA binding domain	Ribosomal_S5_C , Ribosomal_S5
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSPPAP00000012105	Ribosomal_S5_C	PF03719	1.4e-21	1
ENSPPAP00000012105	Ribosomal_S5	PF00333	1.3e-20	2
ENSPPAP00000012109	Ribosomal_S5_C	PF03719	1.9e-21	1
ENSPPAP00000012109	Ribosomal_S5	PF00333	1.2e-14	2
ENSPPAP00000012107	Ribosomal_S5_C	PF03719	2e-21	1
ENSPPAP00000012107	Ribosomal_S5	PF00333	1.6e-20	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSPPAT00000034767	636	211aa	ENSPPAP00000012105
-	ENSPPAT00000034769	753	250aa	ENSPPAP00000012107
-	ENSPPAT00000034771	714	237aa	ENSPPAP00000012109

Gene Model

Click here to download ENSPPAG00000029238's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSPPAG00000029238's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000002133	67.0732	63.8211	pan_paniscus	ENSPPAP00000012107	66	62.8
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000033047	74.1667	72.0833	pan_paniscus	ENSPPAP00000012107	71.2	69.2
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000035765	65.0206	62.1399	pan_paniscus	ENSPPAP00000012107	63.2	60.4
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000005886	67.5889	64.0316	pan_paniscus	ENSPPAP00000012107	68.4	64.8

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000012107	84	82.8	nomascus_leucogenys	ENSNLEP00000047245	84.3373	83.1325
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000012107	58	52.8	dasypus_novemcinctus	ENSDNOP00000031417	70.0483	63.7681
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000012107	55.2	48.8	dasypus_novemcinctus	ENSDNOP00000023589	66.3462	58.6538
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000012107	70.8	67.6	oryctolagus_cuniculus	ENSOCUP00000023756	81.1927	77.5229
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000012107	74.8	70	phascolarctos_cinereus	ENSPCIP00000003203	83.1111	77.7778
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000012107	70	67.2	cebus_imitator	ENSCCAP00000006233	65.0558	62.4535
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000012107	69.2	66	felis_catus	ENSFCAP00000022789	64.5522	61.5672
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000012107	54	52	aotus_nancymaae	ENSANAP00000027736	67.1642	64.6766
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000012107	70.8	67.6	microcebus_murinus	ENSMICP00000037963	74.6835	71.308
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000012107	56.4	54	peromyscus_maniculatus_bairdii	ENSPEMP00000030564	64.977	62.212
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000012107	72.8	69.6	carlito_syrichta	ENSTSYP00000022572	68.9394	65.9091
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000012107	59.6	56	vombatus_ursinus	ENSVURP00010004747	60.8163	57.1429
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000012107	63.6	61.2	catagonus_wagneri	ENSCWAP00000014822	70.9821	68.3036
ENSPPAG00000029238	pan_paniscus	ENSPPAP00000012107	63.2	60.8	cyprinus_carpio_carpio	ENSCCRP00000062998	71.4932	68.7783

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression