RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSPPAG00000009718	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	896 bases	Strand	Plus strand
Position	7 : 129156414 - 129157309	RNA binding domain	Ribosomal_S5_C , Ribosomal_S5
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSPPAP00000002133	Ribosomal_S5_C	PF03719	1.1e-19	1
ENSPPAP00000002133	Ribosomal_S5	PF00333	1e-10	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSPPAT00000010497	741	246aa	ENSPPAP00000002133

Gene Model

Click here to download ENSPPAG00000009718's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSPPAG00000009718's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000012107	66	62.8	pan_paniscus	ENSPPAP00000002133	67.0732	63.8211
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000033047	70.8333	68.3333	pan_paniscus	ENSPPAP00000002133	69.1057	66.6667
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000035765	62.1399	58.4362	pan_paniscus	ENSPPAP00000002133	61.3821	57.7236
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000005886	75.8893	71.9368	pan_paniscus	ENSPPAP00000002133	78.0488	73.9837

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	77.2358	75.2033	nomascus_leucogenys	ENSNLEP00000037107	83.7004	81.4978
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	99.5935	99.187	pan_troglodytes	ENSPTRP00000064172	99.5935	99.187
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	53.252	48.374	dasypus_novemcinctus	ENSDNOP00000031417	63.285	57.4879
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	55.6911	50.813	dasypus_novemcinctus	ENSDNOP00000023589	65.8654	60.0962
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	60.1626	57.7236	callithrix_jacchus	ENSCJAP00000054219	67.2727	64.5455
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	74.7967	71.9512	oryctolagus_cuniculus	ENSOCUP00000023756	84.4037	81.1927
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	70.7317	64.6341	phascolarctos_cinereus	ENSPCIP00000003203	77.3333	70.6667
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	66.6667	63.8211	felis_catus	ENSFCAP00000022789	61.194	58.5821
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	78.8618	76.4228	aotus_nancymaae	ENSANAP00000028810	77.2908	74.9004
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	79.2683	75.6098	microcebus_murinus	ENSMICP00000037963	82.2785	78.481
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	57.3171	53.6585	peromyscus_maniculatus_bairdii	ENSPEMP00000030564	64.977	60.8295
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	81.7073	78.0488	carlito_syrichta	ENSTSYP00000022572	76.1364	72.7273
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	70.7317	65.8537	vombatus_ursinus	ENSVURP00010004747	71.0204	66.1225
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	60.9756	58.1301	catagonus_wagneri	ENSCWAP00000014822	66.9643	63.8393
ENSPPAG00000009718	pan_paniscus	ENSPPAP00000002133	64.2276	60.5691	cyprinus_carpio_carpio	ENSCCRP00000062998	71.4932	67.4208

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression