RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSPPAG00000002774	Gene ID		Accession	-
Symbol	POLR1B	Alias	-	Full Name	RNA polymerase I subunit B
Status	Confidence	Length	34926 bases	Strand	Plus strand
Position	2A : 113555452 - 113590377	RNA binding domain	RNA_pol_Rpb2_1 , RNA_pol_Rpa2_4 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSPPAP00000000801	RNA_pol_Rpb2_1	PF04563	3.6e-34	1
ENSPPAP00000000801	RNA_pol_Rpa2_4	PF06883	1.2e-18	2
ENSPPAP00000000801	RNA_pol_Rpb2_3	PF04565	5.6e-28	3
ENSPPAP00000000801	RNA_pol_Rpb2_7	PF04560	4.6e-22	4
ENSPPAP00000000801	RNA_pol_Rpb2_2	PF04561	1.7e-12	5
ENSPPAP00000000801	RNA_pol_Rpb2_6	PF00562	3e-118	6
ENSPPAP00000000821	RNA_pol_Rpb2_1	PF04563	2.2e-21	1
ENSPPAP00000000821	RNA_pol_Rpa2_4	PF06883	1.2e-18	2
ENSPPAP00000000821	RNA_pol_Rpb2_3	PF04565	5.3e-28	3
ENSPPAP00000000821	RNA_pol_Rpb2_7	PF04560	4.3e-22	4
ENSPPAP00000000821	RNA_pol_Rpb2_2	PF04561	1.6e-12	5
ENSPPAP00000000821	RNA_pol_Rpb2_6	PF00562	2.7e-118	6
ENSPPAP00000000830	RNA_pol_Rpb2_1	PF04563	5.8e-32	1
ENSPPAP00000000830	RNA_pol_Rpa2_4	PF06883	7.2e-11	2
ENSPPAP00000000830	RNA_pol_Rpb2_7	PF04560	3.5e-22	3
ENSPPAP00000000830	RNA_pol_Rpb2_2	PF04561	1.3e-12	4
ENSPPAP00000000830	RNA_pol_Rpb2_6	PF00562	2e-118	5
ENSPPAP00000000835	RNA_pol_Rpb2_1	PF04563	2.8e-34	1
ENSPPAP00000000835	RNA_pol_Rpa2_4	PF06883	1.1e-18	2
ENSPPAP00000000835	RNA_pol_Rpb2_3	PF04565	5e-28	3
ENSPPAP00000000835	RNA_pol_Rpb2_2	PF04561	1.5e-12	4
ENSPPAP00000000835	RNA_pol_Rpb2_6	PF00562	1.1e-109	5

Showing 1 to 22 of 22 entries

Pubmed ID	Full Name	Cell	Author	Time	Doi
No data available in table

Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

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Search:

Name	Transcript ID	bp	Protein	Translation ID
POLR1B-201	ENSPPAT00000003742	5405	1135aa	ENSPPAP00000000801
POLR1B-202	ENSPPAT00000003840	3240	1079aa	ENSPPAP00000000821
POLR1B-203	ENSPPAT00000003856	2859	952aa	ENSPPAP00000000830
POLR1B-204	ENSPPAT00000003885	3045	1014aa	ENSPPAP00000000835
POLR1B-205	ENSPPAT00000003891	321	106aa	ENSPPAP00000000841
POLR1B-206	ENSPPAT00000003895	222	73aa	ENSPPAP00000000844

Showing 1 to 6 of 6 entries

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Gene Model

Click here to download ENSPPAG00000002774's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download ENSPPAG00000002774's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPPAG00000002774	pan_paniscus	ENSPPAP00000035097	42.6746	28.1942	pan_paniscus	ENSPPAP00000000801	44.141	29.163
ENSPPAG00000002774	pan_paniscus	ENSPPAP00000024116	45.5428	30.1853	pan_paniscus	ENSPPAP00000000801	45.4626	30.1322

Showing 1 to 2 of 2 entries

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Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPPAG00000002774	pan_paniscus	ENSPPAP00000000801	95.4185	94.3612	nomascus_leucogenys	ENSNLEP00000002049	96.6964	95.625
ENSPPAG00000002774	pan_paniscus	ENSPPAP00000000801	94.3612	93.7445	pongo_abelii	ENSPPYP00000045450	98.7097	98.0645
ENSPPAG00000002774	pan_paniscus	ENSPPAP00000000801	99.7357	99.5595	homo_sapiens	ENSP00000263331	99.7357	99.5595
ENSPPAG00000002774	pan_paniscus	ENSPPAP00000000801	99.7357	99.4714	gorilla_gorilla	ENSGGOP00000013164	99.7357	99.4714
ENSPPAG00000002774	pan_paniscus	ENSPPAP00000000801	99.9119	99.8238	pan_troglodytes	ENSPTRP00000071178	99.9119	99.8238
ENSPPAG00000002774	pan_paniscus	ENSPPAP00000000801	94.2731	85.2863	ornithorhynchus_anatinus	ENSOANP00000005744	94.2731	85.2863
ENSPPAG00000002774	pan_paniscus	ENSPPAP00000000801	95.1542	88.1057	sarcophilus_harrisii	ENSSHAP00000034315	89.478	82.85
ENSPPAG00000002774	pan_paniscus	ENSPPAP00000000801	71.7181	66.2555	notamacropus_eugenii	ENSMEUP00000012699	71.7181	66.2555
ENSPPAG00000002774	pan_paniscus	ENSPPAP00000000801	81.8502	77.7093	choloepus_hoffmanni	ENSCHOP00000006413	96.0703	91.2099
ENSPPAG00000002774	pan_paniscus	ENSPPAP00000000801	95.7709	91.5418	dasypus_novemcinctus	ENSDNOP00000013744	93.7878	89.6462

Showing 1 to 10 of 197 entries

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression