Description

Ensembl ID ENSPPAG00000001260 Gene ID Accession -
Symbol PRPF38B Alias - Full Name pre-mRNA processing factor 38B
Status Confidence Length 9476 bases Strand Plus strand
Position 1 : 110233031 - 110242506 RNA binding domain PRP38
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSPPAP00000000402 PRP38 PF03371 2.8e-53 1
ENSPPAP00000000409 PRP38 PF03371 1.9e-44 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
PRPF38B-201 ENSPPAT00000001600 3699 546aa ENSPPAP00000000402
PRPF38B-202 ENSPPAT00000001674 573 190aa ENSPPAP00000000409
PRPF38B-203 ENSPPAT00000001678 750 249aa ENSPPAP00000000413

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSPPAG00000001260

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSPPAG00000001260pan_paniscusENSPPAP0000000040299.267499.0843nomascus_leucogenysENSNLEP0000000202599.085998.9031
ENSPPAG00000001260pan_paniscusENSPPAP00000000402100100homo_sapiensENSP00000359042100100
ENSPPAG00000001260pan_paniscusENSPPAP00000000402100100gorilla_gorillaENSGGOP00000011008100100
ENSPPAG00000001260pan_paniscusENSPPAP00000000402100100pan_troglodytesENSPTRP00000001785100100
ENSPPAG00000001260pan_paniscusENSPPAP0000000040296.886495.4212dasypus_novemcinctusENSDNOP0000001958295.143993.705
ENSPPAG00000001260pan_paniscusENSPPAP0000000040297.069694.5055erinaceus_europaeusENSEEUP0000001307597.966795.3789
ENSPPAG00000001260pan_paniscusENSPPAP0000000040299.816899.2674cercocebus_atysENSCATP0000000695899.816899.2674
ENSPPAG00000001260pan_paniscusENSPPAP0000000040220.512819.7802macaca_fascicularisENSMFAP0000001038494.117690.7563
ENSPPAG00000001260pan_paniscusENSPPAP0000000040299.816899.0843macaca_nemestrinaENSMNEP0000001589099.816899.0843
ENSPPAG00000001260pan_paniscusENSPPAP0000000040299.816899.2674macaca_mulattaENSMMUP0000001327899.816899.2674
ENSPPAG00000001260pan_paniscusENSPPAP0000000040299.816899.2674papio_anubisENSPANP0000000443199.634499.0859
ENSPPAG00000001260pan_paniscusENSPPAP0000000040299.816899.2674mandrillus_leucophaeusENSMLEP0000000388599.816899.2674
ENSPPAG00000001260pan_paniscusENSPPAP0000000040277.838875.4579dipodomys_ordiiENSDORP0000001772698.837295.814
ENSPPAG00000001260pan_paniscusENSPPAP0000000040245.421244.5055bos_grunniensENSBGRP0000000062695.019293.1034
ENSPPAG00000001260pan_paniscusENSPPAP0000000040299.450598.9011rhinopithecus_bietiENSRBIP0000003978799.450598.9011
ENSPPAG00000001260pan_paniscusENSPPAP0000000040299.633798.3516loxodonta_africanaENSLAFP0000001434899.633798.3516
ENSPPAG00000001260pan_paniscusENSPPAP0000000040299.267498.1685cebus_imitatorENSCCAP0000003180499.267498.1685
ENSPPAG00000001260pan_paniscusENSPPAP0000000040299.816898.9011ursus_americanusENSUAMP0000003101699.271498.3607
ENSPPAG00000001260pan_paniscusENSPPAP0000000040297.985496.5201bison_bison_bisonENSBBBP0000000016398.526797.0534
ENSPPAG00000001260pan_paniscusENSPPAP0000000040299.084397.9854aotus_nancymaaeENSANAP0000002107499.084397.9854
ENSPPAG00000001260pan_paniscusENSPPAP0000000040231.68530.7692moschus_moschiferusENSMMSP0000001883896.64893.8548
ENSPPAG00000001260pan_paniscusENSPPAP0000000040279.120976.7399octodon_degusENSODEP0000001023399.310396.3218
ENSPPAG00000001260pan_paniscusENSPPAP0000000040278.388375.2747carlito_syrichtaENSTSYP0000003328398.390894.4828
ENSPPAG00000001260pan_paniscusENSPPAP0000000040296.153893.5897vombatus_ursinusENSVURP0001002060094.594692.0721
ENSPPAG00000001260pan_paniscusENSPPAP0000000040226.923125.4579phocoena_sinusENSPSNP0000000575487.582.7381
ENSPPAG00000001260pan_paniscusENSPPAP0000000040286.6382.6007heterocephalus_glaber_femaleENSHGLP0000002326390.61386.3985
ENSPPAG00000001260pan_paniscusENSPPAP0000000040297.435995.9707bos_mutusENSBMUP0000000552197.974296.5009
ENSPPAG00000001260pan_paniscusENSPPAP0000000040299.450598.1685sciurus_vulgarisENSSVLP0000500479699.450598.1685
ENSPPAG00000001260pan_paniscusENSPPAP0000000040299.633799.0843chlorocebus_sabaeusENSCSAP0000001649799.633799.0843
ENSPPAG00000001260pan_paniscusENSPPAP0000000040299.450598.9011rhinopithecus_roxellanaENSRROP0000000960099.450598.9011
ENSPPAG00000001260pan_paniscusENSPPAP0000000040284.432279.8535crocodylus_porosusENSCPRP0000502552695.84290.6445
ENSPPAG00000001260pan_paniscusENSPPAP0000000040273.076965.3846notechis_scutatusENSNSUP0000000845592.790783.0233
ENSPPAG00000001260pan_paniscusENSPPAP0000000040284.981780.7692anas_platyrhynchos_platyrhynchosENSAPLP0000003119093.548488.9113
ENSPPAG00000001260pan_paniscusENSPPAP0000000040286.813281.685meleagris_gallopavoENSMGAP0000000618196.537790.835
ENSPPAG00000001260pan_paniscusENSPPAP0000000040290.659386.0806geospiza_fortisENSGFOP0000000889491.328486.7159
ENSPPAG00000001260pan_paniscusENSPPAP0000000040277.106272.8938struthio_camelus_australisENSSCUP0000001366596.781691.4943
ENSPPAG00000001260pan_paniscusENSPPAP0000000040290.109982.6007salvator_merianaeENSSMRP0000001872787.857180.5357

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression