RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | ENSPPAG00000001260 | Gene ID |
|
Accession |
- |
Symbol |
PRPF38B |
Alias |
- |
Full Name |
pre-mRNA processing factor 38B |
Status |
Confidence |
Length |
9476 bases |
Strand |
Plus strand |
Position |
1 : 110233031 - 110242506 |
RNA binding domain |
PRP38 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
ENSPPAP00000000402 |
PRP38 |
PF03371 |
2.8e-53 |
1 |
ENSPPAP00000000409 |
PRP38 |
PF03371 |
1.9e-44 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
PRPF38B-201 |
ENSPPAT00000001600 |
3699 |
546aa |
ENSPPAP00000000402 |
PRPF38B-202 |
ENSPPAT00000001674 |
573 |
190aa |
ENSPPAP00000000409 |
PRPF38B-203 |
ENSPPAT00000001678 |
750 |
249aa |
ENSPPAP00000000413 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSPPAG00000001260 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 99.2674 | 99.0843 | nomascus_leucogenys | ENSNLEP00000002025 | 99.0859 | 98.9031 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 100 | 100 | homo_sapiens | ENSP00000359042 | 100 | 100 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 100 | 100 | gorilla_gorilla | ENSGGOP00000011008 | 100 | 100 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 100 | 100 | pan_troglodytes | ENSPTRP00000001785 | 100 | 100 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 96.8864 | 95.4212 | dasypus_novemcinctus | ENSDNOP00000019582 | 95.1439 | 93.705 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 97.0696 | 94.5055 | erinaceus_europaeus | ENSEEUP00000013075 | 97.9667 | 95.3789 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 99.8168 | 99.2674 | cercocebus_atys | ENSCATP00000006958 | 99.8168 | 99.2674 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 20.5128 | 19.7802 | macaca_fascicularis | ENSMFAP00000010384 | 94.1176 | 90.7563 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 99.8168 | 99.0843 | macaca_nemestrina | ENSMNEP00000015890 | 99.8168 | 99.0843 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 99.8168 | 99.2674 | macaca_mulatta | ENSMMUP00000013278 | 99.8168 | 99.2674 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 99.8168 | 99.2674 | papio_anubis | ENSPANP00000004431 | 99.6344 | 99.0859 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 99.8168 | 99.2674 | mandrillus_leucophaeus | ENSMLEP00000003885 | 99.8168 | 99.2674 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 77.8388 | 75.4579 | dipodomys_ordii | ENSDORP00000017726 | 98.8372 | 95.814 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 45.4212 | 44.5055 | bos_grunniens | ENSBGRP00000000626 | 95.0192 | 93.1034 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 99.4505 | 98.9011 | rhinopithecus_bieti | ENSRBIP00000039787 | 99.4505 | 98.9011 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 99.6337 | 98.3516 | loxodonta_africana | ENSLAFP00000014348 | 99.6337 | 98.3516 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 99.2674 | 98.1685 | cebus_imitator | ENSCCAP00000031804 | 99.2674 | 98.1685 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 99.8168 | 98.9011 | ursus_americanus | ENSUAMP00000031016 | 99.2714 | 98.3607 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 97.9854 | 96.5201 | bison_bison_bison | ENSBBBP00000000163 | 98.5267 | 97.0534 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 99.0843 | 97.9854 | aotus_nancymaae | ENSANAP00000021074 | 99.0843 | 97.9854 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 31.685 | 30.7692 | moschus_moschiferus | ENSMMSP00000018838 | 96.648 | 93.8548 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 79.1209 | 76.7399 | octodon_degus | ENSODEP00000010233 | 99.3103 | 96.3218 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 78.3883 | 75.2747 | carlito_syrichta | ENSTSYP00000033283 | 98.3908 | 94.4828 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 96.1538 | 93.5897 | vombatus_ursinus | ENSVURP00010020600 | 94.5946 | 92.0721 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 26.9231 | 25.4579 | phocoena_sinus | ENSPSNP00000005754 | 87.5 | 82.7381 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 86.63 | 82.6007 | heterocephalus_glaber_female | ENSHGLP00000023263 | 90.613 | 86.3985 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 97.4359 | 95.9707 | bos_mutus | ENSBMUP00000005521 | 97.9742 | 96.5009 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 99.4505 | 98.1685 | sciurus_vulgaris | ENSSVLP00005004796 | 99.4505 | 98.1685 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 99.6337 | 99.0843 | chlorocebus_sabaeus | ENSCSAP00000016497 | 99.6337 | 99.0843 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 99.4505 | 98.9011 | rhinopithecus_roxellana | ENSRROP00000009600 | 99.4505 | 98.9011 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 84.4322 | 79.8535 | crocodylus_porosus | ENSCPRP00005025526 | 95.842 | 90.6445 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 73.0769 | 65.3846 | notechis_scutatus | ENSNSUP00000008455 | 92.7907 | 83.0233 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 84.9817 | 80.7692 | anas_platyrhynchos_platyrhynchos | ENSAPLP00000031190 | 93.5484 | 88.9113 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 86.8132 | 81.685 | meleagris_gallopavo | ENSMGAP00000006181 | 96.5377 | 90.835 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 90.6593 | 86.0806 | geospiza_fortis | ENSGFOP00000008894 | 91.3284 | 86.7159 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 77.1062 | 72.8938 | struthio_camelus_australis | ENSSCUP00000013665 | 96.7816 | 91.4943 |
ENSPPAG00000001260 | pan_paniscus | ENSPPAP00000000402 | 90.1099 | 82.6007 | salvator_merianae | ENSSMRP00000018727 | 87.8571 | 80.5357 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |