RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSPNYG00000013709	Gene ID	102200643	Accession	-
Symbol	dennd4a	Alias	-	Full Name	DENN domain containing 4A
Status	Confidence	Length	16586 bases	Strand	Minus strand
Position	JH419240.1 : 3486184 - 3502769	RNA binding domain	PPR_3
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSPNYP00000018186	PPR_3	PF13812	2.1e-05	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSPNYT00000018639	5007	1668aa	ENSPNYP00000018186

Gene Model

Click here to download ENSPNYG00000013709's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSPNYG00000013709's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000025186	66.4985	56.5086	pundamilia_nyererei	ENSPNYP00000018186	79.0168	67.1463
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000029179	53.5045	41.0915	pundamilia_nyererei	ENSPNYP00000018186	59.952	46.0432
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000019828	60.3641	46.1485	pundamilia_nyererei	ENSPNYP00000018186	51.6787	39.5084
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000023275	32.921	16.3654	pundamilia_nyererei	ENSPNYP00000018186	20.7434	10.3118
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000011263	30.7119	14.7351	pundamilia_nyererei	ENSPNYP00000018186	22.2422	10.6715

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	11.271	10.9113	fundulus_heteroclitus	ENSFHEP00000004314	94	91
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	90.5276	85.1319	poecilia_reticulata	ENSPREP00000015280	89.6142	84.273
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	89.8681	84.2926	xiphophorus_maculatus	ENSXMAP00000024429	88.9614	83.4421
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	88.1295	82.6139	oryzias_latipes	ENSORLP00000032270	86.4706	81.0588
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	88.6691	83.9329	cyclopterus_lumpus	ENSCLMP00005000450	89.9635	85.1581
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	98.2614	97.6619	oreochromis_niloticus	ENSONIP00000019404	96.129	95.5425
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	99.0408	98.6811	astatotilapia_calliptera	ENSACLP00000023492	96.8347	96.483
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	99.2806	98.8609	haplochromis_burtoni	ENSHBUP00000011485	96.9555	96.5457
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	93.705	90.2878	dicentrarchus_labrax	ENSDLAP00005008654	89.7245	86.4524
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	87.5899	84.4125	lates_calcarifer	ENSLCAP00010025071	86.2456	83.1169
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	93.4053	89.3285	sparus_aurata	ENSSAUP00010021495	90.6341	86.6783
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	88.8489	84.0528	cyprinodon_variegatus	ENSCVAP00000016594	88.2668	83.5021
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	89.5683	84.3525	oryzias_melastigma	ENSOMEP00000019693	89.1408	83.9499
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	89.9281	85.3717	takifugu_rubripes	ENSTRUP00000077331	88.1316	83.6663
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	99.1007	98.6211	neolamprologus_brichardi	ENSNBRP00000021577	99.5783	99.0964
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	91.1271	86.7506	kryptolebias_marmoratus	ENSKMAP00000026080	90.1542	85.8244
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	90.048	84.952	poecilia_latipinna	ENSPLAP00000014366	91.8093	86.6137
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	92.8058	88.5492	cottoperca_gobio	ENSCGOP00000026768	89.4798	85.3757
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	91.9664	88.1894	scophthalmus_maximus	ENSSMAP00000024285	86.6177	83.0604
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	95.7434	93.8849	amphilophus_citrinellus	ENSACIP00000004616	96.7293	94.8516
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	90.4676	85.1319	poecilia_formosa	ENSPFOP00000007517	89.5549	84.273
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	92.9856	89.5683	acanthochromis_polyacanthus	ENSAPOP00000025208	94.3431	90.8759
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	87.3501	82.4341	gasterosteus_aculeatus	ENSGACP00000006444	80.9444	76.3889
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	90.8273	86.3909	labrus_bergylta	ENSLBEP00000020784	92.0413	87.5456
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	93.4053	90.1079	amphiprion_ocellaris	ENSAOCP00000028006	90.2665	87.08
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	76.4988	71.5827	tetraodon_nigroviridis	ENSTNIP00000011260	84.6715	79.2303
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	98.9808	98.6811	maylandia_zebra	ENSMZEP00005030373	96.7761	96.483
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	85.6115	81.7746	anabas_testudineus	ENSATEP00000065851	86.3884	82.5166
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	85.3717	79.3765	hippocampus_comes	ENSHCOP00000011527	89.3911	83.1136
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	90.3477	84.952	oryzias_javanicus	ENSOJAP00000029341	87.3117	82.0973
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	90.3477	85.6715	nothobranchius_furzeri	ENSNFUP00015018086	89.5957	84.9584
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	86.5707	80.8753	oryzias_sinensis	ENSOSIP00000046746	88.6433	82.8115
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	92.2062	88.9688	amphiprion_percula	ENSAPEP00000029061	94.4137	91.0988
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	92.3261	88.3693	mastacembelus_armatus	ENSMAMP00000045815	89.3271	85.4988
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	93.5252	90.5875	stegastes_partitus	ENSSPAP00000025000	90.645	87.7978
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	87.8297	82.7338	betta_splendens	ENSBSLP00000030778	87.1505	82.094
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	92.3261	89.4484	seriola_lalandi_dorsalis	ENSSLDP00000030869	93.3333	90.4242
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	89.8082	84.4125	cynoglossus_semilaevis	ENSCSEP00000010540	86.74	81.5287
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	93.0456	88.9688	larimichthys_crocea	ENSLCRP00005024859	90.3902	86.4298
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	93.4053	90.4077	seriola_dumerili	ENSSDUP00000011240	89.8501	86.9666
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	89.6283	85.1319	sander_lucioperca	ENSSLUP00000043076	86.7673	82.4144
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	7.67386	5.21583	ciona_intestinalis	ENSCINP00000030085	41.0256	27.8846
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	7.07434	5.33573	callorhinchus_milii	ENSCMIP00000003645	64.1304	48.3696
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	82.6139	73.2014	esox_lucius	ENSELUP00000047785	63.649	56.3972
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	82.6139	73.801	oncorhynchus_kisutch	ENSOKIP00005044775	58.7633	52.4947
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	79.6763	70.9832	oncorhynchus_mykiss	ENSOMYP00000112239	79.7719	71.0684
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	82.7938	73.741	salmo_salar	ENSSSAP00000021133	70.9296	63.1741
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	83.1535	73.9808	salmo_trutta	ENSSTUP00000034440	69.5238	61.8546
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	83.9928	76.6187	gadus_morhua	ENSGMOP00000034270	78.8407	71.919
ENSPNYG00000013709	pundamilia_nyererei	ENSPNYP00000018186	88.9089	85.0719	myripristis_murdjan	ENSMMDP00005020775	89.4451	85.585

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression