RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSPLOG00000008887	Gene ID		Accession	-
Symbol	PRPF38B	Alias	-	Full Name	pre-mRNA processing factor 38B
Status	Confidence	Length	7607 bases	Strand	Minus strand
Position	C2 : 126430395 - 126438001	RNA binding domain	PRP38
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSPLOP00000012115	PRP38	PF03371	2.1e-53	1
ENSPLOP00000012138	PRP38	PF03371	1.7e-44	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSPLOT00000013431	1647	548aa	ENSPLOP00000012115
-	ENSPLOT00000013456	576	191aa	ENSPLOP00000012138

Gene Model

Click here to download ENSPLOG00000008887's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSPLOG00000008887's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPLOG00000008887

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPLOG00000008887	panthera_leo	ENSPLOP00000012115	99.635	99.2701	mustela_putorius_furo	ENSMPUP00000002709	99.4536	99.0893
ENSPLOG00000008887	panthera_leo	ENSPLOP00000012115	98.9051	97.4453	marmota_marmota_marmota	ENSMMMP00000023045	98.725	97.2678
ENSPLOG00000008887	panthera_leo	ENSPLOP00000012115	99.0876	98.1752	equus_caballus	ENSECAP00000001579	99.4505	98.5348
ENSPLOG00000008887	panthera_leo	ENSPLOP00000012115	94.5256	94.3431	panthera_tigris_altaica	ENSPTIP00000016141	98.1061	97.9167
ENSPLOG00000008887	panthera_leo	ENSPLOP00000012115	99.635	99.4526	neovison_vison	ENSNVIP00000031111	99.4536	99.2714
ENSPLOG00000008887	panthera_leo	ENSPLOP00000012115	82.1168	79.7445	oryctolagus_cuniculus	ENSOCUP00000016446	90.5433	87.9276
ENSPLOG00000008887	panthera_leo	ENSPLOP00000012115	100	100	panthera_pardus	ENSPPRP00000006775	99.8178	99.8178
ENSPLOG00000008887	panthera_leo	ENSPLOP00000012115	99.0876	97.4453	urocitellus_parryii	ENSUPAP00010019065	98.5481	96.9147
ENSPLOG00000008887	panthera_leo	ENSPLOP00000012115	99.0876	97.6277	ictidomys_tridecemlineatus	ENSSTOP00000022335	98.7273	97.2727

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression