Description

Ensembl ID ENSPCLG00000000539 Gene ID Accession -
Symbol Alias - Full Name staufen double-stranded RNA binding protein 1
Status Confidence Length 17944 bases Strand Minus strand
Position QCWP01000005.1 : 7487412 - 7505355 RNA binding domain dsrm , Staufen_C
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSPCLP00000000609 dsrm PF00035 7.3e-49 1
ENSPCLP00000000609 dsrm PF00035 7.3e-49 2
ENSPCLP00000000609 dsrm PF00035 7.3e-49 3
ENSPCLP00000000609 dsrm PF00035 7.3e-49 4
ENSPCLP00000000609 Staufen_C PF16482 3.7e-57 5
ENSPCLP00000000608 dsrm PF00035 2e-45 1
ENSPCLP00000000608 dsrm PF00035 2e-45 2
ENSPCLP00000000608 dsrm PF00035 2e-45 3
ENSPCLP00000000608 dsrm PF00035 2e-45 4
ENSPCLP00000000608 Staufen_C PF16482 5.5e-57 5
ENSPCLP00000000610 dsrm PF00035 4.2e-31 1
ENSPCLP00000000610 dsrm PF00035 4.2e-31 2
ENSPCLP00000000610 dsrm PF00035 4.2e-31 3
ENSPCLP00000000610 Staufen_C PF16482 3.8e-57 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSPCLT00000000791 2136 711aa ENSPCLP00000000608
- ENSPCLT00000000792 2007 668aa ENSPCLP00000000609
- ENSPCLT00000000793 1722 573aa ENSPCLP00000000610

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSPCLG00000000539

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSPCLG00000000539

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression