RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSPCIG00000017222	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1402 bases	Strand	Plus strand
Position	MSTS01000106.1 : 7483213 - 7484614	RNA binding domain	LSM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSPCIP00000022696	LSM	PF01423	3.5e-08	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSPCIT00000028005	366	121aa	ENSPCIP00000022696

Gene Model

Click here to download ENSPCIG00000017222's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSPCIG00000017222's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPCIG00000017222

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSPCIG00000017222	phascolarctos_cinereus	ENSPCIP00000022696	37.1901	29.7521	cercocebus_atys	ENSCATP00000038103	60.8108	48.6486
ENSPCIG00000017222	phascolarctos_cinereus	ENSPCIP00000022696	41.3223	31.405	cercocebus_atys	ENSCATP00000030061	68.4931	52.0548
ENSPCIG00000017222	phascolarctos_cinereus	ENSPCIP00000022696	35.5372	28.0992	panthera_pardus	ENSPPRP00000028174	68.254	53.9683
ENSPCIG00000017222	phascolarctos_cinereus	ENSPCIP00000022696	38.843	27.2727	neovison_vison	ENSNVIP00000004453	58.75	41.25
ENSPCIG00000017222	phascolarctos_cinereus	ENSPCIP00000022696	38.0165	28.9256	chrysemys_picta_bellii	ENSCPBP00000031303	67.6471	51.4706
ENSPCIG00000017222	phascolarctos_cinereus	ENSPCIP00000022696	39.6694	31.405	podarcis_muralis	ENSPMRP00000000909	64.8649	51.3514
ENSPCIG00000017222	phascolarctos_cinereus	ENSPCIP00000022696	32.2314	24.7934	chelonoidis_abingdonii	ENSCABP00000014851	59.0909	45.4545
ENSPCIG00000017222	phascolarctos_cinereus	ENSPCIP00000022696	34.7107	26.4463	salvator_merianae	ENSSMRP00000016287	49.4118	37.6471
ENSPCIG00000017222	phascolarctos_cinereus	ENSPCIP00000022696	33.0578	25.6198	salvator_merianae	ENSSMRP00000015556	57.971	44.9275
ENSPCIG00000017222	phascolarctos_cinereus	ENSPCIP00000022696	36.3636	28.0992	salvator_merianae	ENSSMRP00000030302	39.2857	30.3571
ENSPCIG00000017222	phascolarctos_cinereus	ENSPCIP00000022696	33.0578	28.9256	terrapene_carolina_triunguis	ENSTMTP00000005123	78.4314	68.6274

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression