RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSOTSG00005037778	Gene ID	796574	Accession	-
Symbol	srrm4	Alias	-	Full Name	serine/arginine repetitive matrix 4
Status	Confidence	Length	135726 bases	Strand	Plus strand
Position	PEKY01000437.1 : 1054383 - 1190108	RNA binding domain	SRRM_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOTSP00005080306	SRRM_C	PF15230	5.3e-21	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSOTST00005087029	2592	623aa	ENSOTSP00005080306

Gene Model

Click here to download ENSOTSG00005037778's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOTSG00005037778's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005072501	83.7728	79.716	oncorhynchus_tshawytscha	ENSOTSP00005080306	66.2921	63.0819

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	63.0819	52.6485	lepisosteus_oculatus	ENSLOCP00000003803	64.0065	53.4202
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	41.0915	34.5104	clupea_harengus	ENSCHAP00000008443	70.5234	59.2286
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	58.2665	49.2777	danio_rerio	ENSDARP00000136286	63.2404	53.4843
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	60.0321	48.4751	carassius_auratus	ENSCARP00000091174	65.2705	52.7051
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	57.9454	48.6356	carassius_auratus	ENSCARP00000011518	62.1343	52.1515
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	55.8587	44.6228	astyanax_mexicanus	ENSAMXP00000033222	60	47.931
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	49.5987	38.6838	ictalurus_punctatus	ENSIPUP00000026781	63.843	49.7934
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	34.1894	26.6453	electrophorus_electricus	ENSEEEP00000023761	54.6154	42.5641
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	56.5008	49.2777	esox_lucius	ENSELUP00000028407	70.9677	61.8952
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	52.6485	45.7464	oncorhynchus_kisutch	ENSOKIP00005006434	72.4062	62.9139
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	97.5923	96.9502	oncorhynchus_mykiss	ENSOMYP00000027018	97.28	96.64
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	81.862	80.4173	salmo_salar	ENSSSAP00000092184	93.578	91.9266
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	51.3644	40.1284	gadus_morhua	ENSGMOP00000007184	61.8955	48.3559
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	89.2456	88.122	salmo_trutta	ENSSTUP00000076578	94.8805	93.686
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	39.8074	33.0658	fundulus_heteroclitus	ENSFHEP00000004172	66.1333	54.9333
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	46.7095	40.931	poecilia_reticulata	ENSPREP00000006603	69.7842	61.1511
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	68.8604	59.2295	xiphophorus_maculatus	ENSXMAP00000002657	68.4211	58.8517
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	43.6597	37.2392	oryzias_latipes	ENSORLP00000001445	67.1605	57.284
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	51.2039	41.7335	cyclopterus_lumpus	ENSCLMP00005035412	65.5031	53.3881
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	71.1075	62.4398	oreochromis_niloticus	ENSONIP00000013265	70.9936	62.3397
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	70.4655	61.7978	haplochromis_burtoni	ENSHBUP00000008998	71.732	62.9085
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	51.5249	45.1043	astatotilapia_calliptera	ENSACLP00000034761	73.1207	64.0091
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	74.3178	65.4896	sparus_aurata	ENSSAUP00010048696	74.1987	65.3846
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	74.9599	64.2055	dicentrarchus_labrax	ENSDLAP00005044504	74.4817	63.7959
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	64.366	52.809	takifugu_rubripes	ENSTRUP00000078360	69.1379	56.7241
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	63.0819	53.13	oryzias_melastigma	ENSOMEP00000011089	65.1741	54.8922
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	52.9695	45.2648	neolamprologus_brichardi	ENSNBRP00000019879	69.3277	59.2437
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	66.2921	57.3034	kryptolebias_marmoratus	ENSKMAP00000002422	69.5286	60.101
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	50.2408	43.1782	seriola_dumerili	ENSSDUP00000024103	70.1794	60.3139
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	59.069	49.7592	pygocentrus_nattereri	ENSPNAP00000003992	62.6917	52.8109
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	46.2279	40.4494	poecilia_latipinna	ENSPLAP00000019681	68.7351	60.1432
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	42.2151	35.9551	poecilia_formosa	ENSPFOP00000014650	69.7613	59.4164
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	48.1541	40.7705	scophthalmus_maximus	ENSSMAP00000019987	68.0272	57.5964
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	72.5522	61.9583	labrus_bergylta	ENSLBEP00000010971	72.32	61.76
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	52.6485	45.7464	cottoperca_gobio	ENSCGOP00000026807	74.2081	64.4796
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	46.87	41.0915	amphilophus_citrinellus	ENSACIP00000002681	69.0307	60.5201
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	35.9551	29.2135	mastacembelus_armatus	ENSMAMP00000006299	66.8657	54.3284
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	36.2761	29.053	nothobranchius_furzeri	ENSNFUP00015030665	57.6531	46.1735
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	47.8331	37.0787	cynoglossus_semilaevis	ENSCSEP00000032689	58.317	45.2055
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	41.7335	33.7079	cynoglossus_semilaevis	ENSCSEP00000011915	65.8228	53.1646
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	71.2681	60.6742	betta_splendens	ENSBSLP00000017495	72.7869	61.9672
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	73.8363	63.7239	amphiprion_ocellaris	ENSAOCP00000029549	74.0741	63.9291
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	51.2039	44.3018	seriola_lalandi_dorsalis	ENSSLDP00000019300	70.7317	61.1973
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	59.7111	49.1172	paramormyrops_kingsleyae	ENSPKIP00000027230	63.8079	52.4871
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	47.9936	41.4125	larimichthys_crocea	ENSLCRP00005049756	74.0099	63.8614
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	43.8202	36.2761	oryzias_javanicus	ENSOJAP00000022785	61.6253	51.0158
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	51.5249	45.1043	maylandia_zebra	ENSMZEP00005029160	73.1207	64.0091
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	61.3162	50.5618	scleropages_formosus	ENSSFOP00015031039	60.0629	49.5283
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	47.0305	40.1284	myripristis_murdjan	ENSMMDP00005037616	68.9412	58.8235
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	39.3258	31.9422	sander_lucioperca	ENSSLUP00000053842	67.1233	54.5205
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	51.5249	45.1043	pundamilia_nyererei	ENSPNYP00000010244	72.2973	63.2883
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	73.6758	63.8844	acanthochromis_polyacanthus	ENSAPOP00000026859	73.913	64.0902
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	73.5153	63.2424	amphiprion_percula	ENSAPEP00000015627	73.5153	63.2424
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	40.1284	31.7817	sinocyclocheilus_grahami	ENSSGRP00000054852	58.1395	46.0465
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	54.4141	46.87	stegastes_partitus	ENSSPAP00000021476	71.9745	61.9958
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	58.748	47.8331	cyprinus_carpio_carpio	ENSCCRP00000018773	61.1018	49.7496
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	61.1557	50.0803	cyprinus_carpio_carpio	ENSCCRP00000039751	66.0312	54.0728
ENSOTSG00005037778	oncorhynchus_tshawytscha	ENSOTSP00005080306	48.6356	42.0546	anabas_testudineus	ENSATEP00000007669	74.6305	64.532

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression