RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSOTSG00005032711	Gene ID		Accession	-
Symbol	uba52	Alias	-	Full Name	ubiquitin A-52 residue ribosomal protein fusion product 1
Status	Confidence	Length	2736 bases	Strand	Minus strand
Position	10 : 32037767 - 32040502	RNA binding domain	Ribosomal_L40e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOTSP00005068762	Ribosomal_L40e	PF01020	5.3e-32	1
ENSOTSP00005068783	Ribosomal_L40e	PF01020	1.4e-31	1
ENSOTSP00005068760	Ribosomal_L40e	PF01020	2.8e-10	1
ENSOTSP00005068784	Ribosomal_L40e	PF01020	2.9e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
uba52-201	ENSOTST00005074676	405	118aa	ENSOTSP00005068760
uba52-202	ENSOTST00005074678	341	96aa	ENSOTSP00005068762
uba52-203	ENSOTST00005074699	512	153aa	ENSOTSP00005068783
uba52-204	ENSOTST00005074700	555	168aa	ENSOTSP00005068784
uba52-205	ENSOTST00005074701	291	81aa	ENSOTSP00005068785

Gene Model

Click here to download ENSOTSG00005032711's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOTSG00005032711's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005000975	21.5247	13.9013	oncorhynchus_tshawytscha	ENSOTSP00005068784	28.5714	18.4524
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005090442	31.7881	20.5298	oncorhynchus_tshawytscha	ENSOTSP00005068784	28.5714	18.4524
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005071212	11.3636	7.27273	oncorhynchus_tshawytscha	ENSOTSP00005068784	44.6429	28.5714
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005041218	10.0264	6.72823	oncorhynchus_tshawytscha	ENSOTSP00005068784	45.2381	30.3571
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005037046	2.7972	1.3986	oncorhynchus_tshawytscha	ENSOTSP00005068784	2.38095	1.19048
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005076686	72.093	66.2791	oncorhynchus_tshawytscha	ENSOTSP00005068784	36.9048	33.9286
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005076682	38.7755	32.6531	oncorhynchus_tshawytscha	ENSOTSP00005068784	33.9286	28.5714
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005035421	51.6556	47.0199	oncorhynchus_tshawytscha	ENSOTSP00005068784	46.4286	42.2619
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005011844	7.14286	3.96825	oncorhynchus_tshawytscha	ENSOTSP00005068784	5.35714	2.97619
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005063273	39.485	35.6223	oncorhynchus_tshawytscha	ENSOTSP00005068784	54.7619	49.4048
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005052533	77.451	74.5098	oncorhynchus_tshawytscha	ENSOTSP00005068784	47.0238	45.2381
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005037047	95.1219	91.4634	oncorhynchus_tshawytscha	ENSOTSP00005068784	46.4286	44.6429
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005087150	60.8974	56.4103	oncorhynchus_tshawytscha	ENSOTSP00005068784	56.5476	52.381
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005052534	81.0127	75.9494	oncorhynchus_tshawytscha	ENSOTSP00005068784	38.0952	35.7143
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005052054	70.7865	53.9326	oncorhynchus_tshawytscha	ENSOTSP00005068784	37.5	28.5714
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005028281	51.2397	38.0165	oncorhynchus_tshawytscha	ENSOTSP00005068784	36.9048	27.381
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005090455	56.7308	41.3462	oncorhynchus_tshawytscha	ENSOTSP00005068784	35.119	25.5952
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005014269	61.0526	44.2105	oncorhynchus_tshawytscha	ENSOTSP00005068784	34.5238	25
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005055517	47.4138	34.4828	oncorhynchus_tshawytscha	ENSOTSP00005068784	32.7381	23.8095
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005081726	37.1795	26.9231	oncorhynchus_tshawytscha	ENSOTSP00005068784	34.5238	25
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005056120	52.381	38.0952	oncorhynchus_tshawytscha	ENSOTSP00005068784	32.7381	23.8095
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005042996	69.8795	65.0602	oncorhynchus_tshawytscha	ENSOTSP00005068784	34.5238	32.1429
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005056391	78.9062	76.5625	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	58.3333
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005052994	78.9062	76.5625	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	58.3333
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005066656	78.9062	76.5625	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	58.3333

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	59.5238	57.1429	caenorhabditis_elegans	ZK1010.1.1	78.125	75
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	59.5238	57.7381	drosophila_melanogaster	FBpp0306837	78.125	75.7812
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	57.7381	54.7619	ciona_intestinalis	ENSCINP00000010307	75.7812	71.875
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	39.881	38.0952	eptatretus_burgeri	ENSEBUP00000004699	58.2609	55.6522
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	58.9286	54.7619	callorhinchus_milii	ENSCMIP00000012025	77.3438	71.875
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	58.3333	56.5476	latimeria_chalumnae	ENSLACP00000003879	76.5625	74.2188
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	58.9286	57.1429	latimeria_chalumnae	ENSLACP00000009213	42.8571	41.5584
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	57.7381	danio_rerio	ENSDARP00000060744	78.9062	75.7812
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	57.7381	carassius_auratus	ENSCARP00000002743	66.0131	63.3987
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	57.7381	carassius_auratus	ENSCARP00000022067	78.9062	75.7812
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	57.7381	carassius_auratus	ENSCARP00000025500	78.9062	75.7812
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	57.7381	astyanax_mexicanus	ENSAMXP00000034187	78.9062	75.7812
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	59.5238	57.1429	ictalurus_punctatus	ENSIPUP00000007381	78.125	75
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	57.1429	electrophorus_electricus	ENSEEEP00000048836	78.9062	75
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	98.8095	97.619	oncorhynchus_mykiss	ENSOMYP00000004063	98.2249	97.0414
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	59.5238	57.7381	gadus_morhua	ENSGMOP00000008109	78.125	75.7812
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	46.4286	42.8571	cyclopterus_lumpus	ENSCLMP00005018249	85.7143	79.1209
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	62.5	59.5238	laticauda_laticaudata	ENSLLTP00000001228	70	66.6667
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	57.1429	55.3571	cercocebus_atys	ENSCATP00000006132	71.6418	69.403
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	58.3333	56.5476	callithrix_jacchus	ENSCJAP00000048706	71.5328	69.3431
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	48.2143	48.2143	macaca_nemestrina	ENSMNEP00000008415	97.5904	97.5904
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.7143	59.5238	pongo_abelii	ENSPPYP00000002230	73.3813	71.9424
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	41.0714	38.6905	ursus_americanus	ENSUAMP00000010232	78.4091	73.8636
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	50	45.8333	panthera_leo	ENSPLOP00000013658	43.299	39.6907
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	66.0714	62.5	delphinapterus_leucas	ENSDLEP00000008194	59.3583	56.1497
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	36.9048	32.7381	equus_caballus	ENSECAP00000004962	65.9574	58.5106
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	44.6429	37.5	equus_caballus	ENSECAP00000043854	61.4754	51.6393
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	42.8571	38.6905	capra_hircus	ENSCHIP00000027691	62.069	56.0345
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	54.7619	53.5714	urocitellus_parryii	ENSUPAP00010004754	53.8012	52.6316
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	54.1667	51.7857	mesocricetus_auratus	ENSMAUP00000006483	79.8246	76.3158
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	61.3095	60.119	mus_spicilegus	ENSMSIP00000022326	76.2963	74.8148
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	44.0476	38.6905	rattus_norvegicus	ENSRNOP00000091186	67.2727	59.0909
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	61.3095	60.119	octodon_degus	ENSODEP00000026176	69.1275	67.7852
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	26.7857	24.4048	heterocephalus_glaber_female	ENSHGLP00000055534	33.3333	30.3704
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	59.5238	57.7381	cyprinodon_variegatus	ENSCVAP00000025559	78.125	75.7812
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	59.5238	57.7381	takifugu_rubripes	ENSTRUP00000009801	78.125	75.7812
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	57.7381	sorex_araneus	ENSSARP00000000901	78.9062	75.7812
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	50	47.619	saimiri_boliviensis_boliviensis	ENSSBOP00000020952	60	57.1429
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	59.5238	56.5476	pygocentrus_nattereri	ENSPNAP00000019133	78.125	74.2188
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	58.3333	54.7619	ciona_savignyi	ENSCSAVP00000003728	71.0145	66.6667
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	48.2143	42.8571	myotis_lucifugus	ENSMLUP00000022745	69.2308	61.5385
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	75	70.8333	taeniopygia_guttata	ENSTGUP00000024957	76.8293	72.561
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	58.3333	cottoperca_gobio	ENSCGOP00000032854	78.9062	76.5625
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	55.3571	52.381	rhinolophus_ferrumequinum	ENSRFEP00010006262	86.1111	81.4815
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	67.2619	64.881	moschus_moschiferus	ENSMMSP00000029407	50.9009	49.0991
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	59.5238	57.7381	tetraodon_nigroviridis	ENSTNIP00000013085	78.125	75.7812
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	57.7381	54.1667	saccharomyces_cerevisiae	YIL148W	75.7812	71.0938
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	57.7381	54.1667	saccharomyces_cerevisiae	YKR094C	75.7812	71.0938
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	59.5238	58.3333	cynoglossus_semilaevis	ENSCSEP00000025345	66.2252	64.9007
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	66.6667	62.5	struthio_camelus_australis	ENSSCUP00000002422	64.3678	60.3448
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	55.9524	54.1667	peromyscus_maniculatus_bairdii	ENSPEMP00000022131	57.6687	55.8282
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	42.8571	39.2857	anser_brachyrhynchus	ENSABRP00000005779	69.9029	64.0777
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	33.3333	26.7857	denticeps_clupeoides	ENSDCDP00000059260	34.3558	27.6074
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	39.2857	37.5	sinocyclocheilus_grahami	ENSSGRP00000083272	69.4737	66.3158
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	64.881	60.119	aquila_chrysaetos_chrysaetos	ENSACCP00020008973	57.672	53.4392
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	57.7381	cyprinus_carpio_carpio	ENSCCRP00000013341	68.7075	65.9864
ENSOTSG00005032711	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	57.7381	cyprinus_carpio_carpio	ENSCCRP00000029926	66.4474	63.8158

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression