RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSOTSG00005031794	Gene ID	112252118	Accession	-
Symbol	uba52	Alias	-	Full Name	ubiquitin-60S ribosomal protein L40
Status	Confidence	Length	1486 bases	Strand	Plus strand
Position	6 : 12282934 - 12284419	RNA binding domain	Ribosomal_L40e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOTSP00005066656	Ribosomal_L40e	PF01020	3.7e-32	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
uba52-201	ENSOTST00005072387	477	128aa	ENSOTSP00005066656

Gene Model

Click here to download ENSOTSG00005031794's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOTSG00005031794's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005000975	22.87	12.5561	oncorhynchus_tshawytscha	ENSOTSP00005066656	39.8438	21.875
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005090442	33.7748	18.543	oncorhynchus_tshawytscha	ENSOTSP00005066656	39.8438	21.875
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005071212	12.4242	7.72727	oncorhynchus_tshawytscha	ENSOTSP00005066656	64.0625	39.8438
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005041218	10.9499	6.72823	oncorhynchus_tshawytscha	ENSOTSP00005066656	64.8438	39.8438
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005037046	6.29371	3.4965	oncorhynchus_tshawytscha	ENSOTSP00005066656	7.03125	3.90625
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005076686	72.093	67.4419	oncorhynchus_tshawytscha	ENSOTSP00005066656	48.4375	45.3125
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005076682	40.1361	34.0136	oncorhynchus_tshawytscha	ENSOTSP00005066656	46.0938	39.0625
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005035421	54.9669	49.0066	oncorhynchus_tshawytscha	ENSOTSP00005066656	64.8438	57.8125
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005011844	7.14286	3.96825	oncorhynchus_tshawytscha	ENSOTSP00005066656	7.03125	3.90625
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005063273	39.0558	35.6223	oncorhynchus_tshawytscha	ENSOTSP00005066656	71.0938	64.8438
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005052533	79.4118	77.451	oncorhynchus_tshawytscha	ENSOTSP00005066656	63.2812	61.7188
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005037047	98.7805	96.3415	oncorhynchus_tshawytscha	ENSOTSP00005066656	63.2812	61.7188
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005087150	61.5385	55.7692	oncorhynchus_tshawytscha	ENSOTSP00005066656	75	67.9688
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005052534	82.2785	75.9494	oncorhynchus_tshawytscha	ENSOTSP00005066656	50.7812	46.875
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005052054	70.7865	52.809	oncorhynchus_tshawytscha	ENSOTSP00005066656	49.2188	36.7188
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005028281	51.2397	38.0165	oncorhynchus_tshawytscha	ENSOTSP00005066656	48.4375	35.9375
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005090455	59.6154	41.3462	oncorhynchus_tshawytscha	ENSOTSP00005066656	48.4375	33.5938
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005014269	62.1053	43.1579	oncorhynchus_tshawytscha	ENSOTSP00005066656	46.0938	32.0312
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005055517	47.4138	35.3448	oncorhynchus_tshawytscha	ENSOTSP00005066656	42.9688	32.0312
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005081726	37.1795	26.2821	oncorhynchus_tshawytscha	ENSOTSP00005066656	45.3125	32.0312
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005056120	52.381	39.0476	oncorhynchus_tshawytscha	ENSOTSP00005066656	42.9688	32.0312
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005056391	100	99.2188	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	99.2188
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	99.2188
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005042996	84.3373	80.7229	oncorhynchus_tshawytscha	ENSOTSP00005066656	54.6875	52.3438
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	58.3333	oncorhynchus_tshawytscha	ENSOTSP00005066656	78.9062	76.5625

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	95.3125	93.75	caenorhabditis_elegans	ZK1010.1.1	95.3125	93.75
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	98.4375	98.4375	drosophila_melanogaster	FBpp0306837	98.4375	98.4375
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	95.3125	92.9688	ciona_intestinalis	ENSCINP00000010307	95.3125	92.9688
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	72.6562	71.875	eptatretus_burgeri	ENSEBUP00000004699	80.8696	80
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	96.875	94.5312	callorhinchus_milii	ENSCMIP00000012025	96.875	94.5312
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	97.6562	97.6562	latimeria_chalumnae	ENSLACP00000003879	97.6562	97.6562
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	98.4375	98.4375	latimeria_chalumnae	ENSLACP00000009213	54.5455	54.5455
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	lepisosteus_oculatus	ENSLOCP00000002515	83.6601	83.6601
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	99.2188	danio_rerio	ENSDARP00000060744	100	99.2188
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	99.2188	carassius_auratus	ENSCARP00000002743	83.6601	83.0065
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	99.2188	carassius_auratus	ENSCARP00000022067	100	99.2188
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	99.2188	carassius_auratus	ENSCARP00000025500	100	99.2188
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	99.2188	astyanax_mexicanus	ENSAMXP00000034187	100	99.2188
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	99.2188	98.4375	ictalurus_punctatus	ENSIPUP00000007381	99.2188	98.4375
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	98.4375	electrophorus_electricus	ENSEEEP00000048836	100	98.4375
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	oncorhynchus_kisutch	ENSOKIP00005073642	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	oncorhynchus_mykiss	ENSOMYP00000001265	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	99.2188	99.2188	gadus_morhua	ENSGMOP00000008109	99.2188	99.2188
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	fundulus_heteroclitus	ENSFHEP00000030704	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	poecilia_reticulata	ENSPREP00000016516	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	xiphophorus_maculatus	ENSXMAP00000003931	36.0563	36.0563
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	98.4375	98.4375	oryzias_latipes	ENSORLP00000010731	98.4375	98.4375
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	cyclopterus_lumpus	ENSCLMP00005000904	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	oreochromis_niloticus	ENSONIP00000016035	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	haplochromis_burtoni	ENSHBUP00000026409	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	astatotilapia_calliptera	ENSACLP00000032826	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	96.0938	96.0938	equus_caballus	ENSECAP00000073916	84.8276	84.8276
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	56.25	53.9062	heterocephalus_glaber_female	ENSHGLP00000055534	53.3333	51.1111
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	dicentrarchus_labrax	ENSDLAP00005044755	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	99.2188	99.2188	cyprinodon_variegatus	ENSCVAP00000025559	99.2188	99.2188
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	99.2188	99.2188	takifugu_rubripes	ENSTRUP00000009801	99.2188	99.2188
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	99.2188	99.2188	oryzias_melastigma	ENSOMEP00000002833	98.4496	98.4496
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	neolamprologus_brichardi	ENSNBRP00000028817	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	kryptolebias_marmoratus	ENSKMAP00000006381	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	98.4375	sorex_araneus	ENSSARP00000000901	100	98.4375
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	99.2188	97.6562	pygocentrus_nattereri	ENSPNAP00000019133	99.2188	97.6562
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	poecilia_latipinna	ENSPLAP00000027495	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	95.3125	92.1875	ciona_savignyi	ENSCSAVP00000003728	88.4058	85.5072
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	poecilia_formosa	ENSPFOP00000001094	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	scophthalmus_maximus	ENSSMAP00000034350	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	99.2188	99.2188	tetraodon_nigroviridis	ENSTNIP00000013085	99.2188	99.2188
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	mastacembelus_armatus	ENSMAMP00000050326	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	94.5312	90.625	saccharomyces_cerevisiae	YIL148W	94.5312	90.625
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	94.5312	90.625	saccharomyces_cerevisiae	YKR094C	94.5312	90.625
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	gasterosteus_aculeatus	ENSGACP00000010640	98.4615	98.4615
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	nothobranchius_furzeri	ENSNFUP00015045117	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	96.875	94.5312	leptobrachium_leishanense	ENSLLEP00000008643	70.8571	69.1429
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	betta_splendens	ENSBSLP00000000745	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	amphiprion_ocellaris	ENSAOCP00000002979	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	seriola_lalandi_dorsalis	ENSSLDP00000008990	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	92.1875	89.0625	cebus_imitator	ENSCCAP00000011005	92.9134	89.7638
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	paramormyrops_kingsleyae	ENSPKIP00000021658	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	99.2188	99.2188	oryzias_javanicus	ENSOJAP00000023193	86.9863	86.9863
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	maylandia_zebra	ENSMZEP00005021806	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	scleropages_formosus	ENSSFOP00015033218	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	sander_lucioperca	ENSSLUP00000030972	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	hippocampus_comes	ENSHCOP00000021282	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	pundamilia_nyererei	ENSPNYP00000021999	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	98.4375	98.4375	oryzias_sinensis	ENSOSIP00000041566	96.9231	96.9231
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	acanthochromis_polyacanthus	ENSAPOP00000026882	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	77.3438	73.4375	anser_brachyrhynchus	ENSABRP00000005779	96.1165	91.2621
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	amphiprion_percula	ENSAPEP00000008942	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	64.8438	57.8125	denticeps_clupeoides	ENSDCDP00000059260	50.9202	45.3988
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	72.6562	71.875	sinocyclocheilus_grahami	ENSSGRP00000083272	97.8947	96.8421
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	stegastes_partitus	ENSSPAP00000014992	100	100
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	99.2188	cyprinus_carpio_carpio	ENSCCRP00000013341	87.0748	86.3946
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	99.2188	cyprinus_carpio_carpio	ENSCCRP00000029926	84.2105	83.5526
ENSOTSG00005031794	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	100	anabas_testudineus	ENSATEP00000060395	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression