RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSOTSG00005029865	Gene ID		Accession	-
Symbol	rpl39	Alias	-	Full Name	ribosomal protein L39
Status	Confidence	Length	2189 bases	Strand	Minus strand
Position	PEKY01015305.1 : 1105745 - 1107933	RNA binding domain	Ribosomal_L39
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOTSP00005062336	Ribosomal_L39	PF00832	2.4e-23	1
ENSOTSP00005062335	Ribosomal_L39	PF00832	3.2e-22	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
rpl39-201	ENSOTST00005067802	1095	143aa	ENSOTSP00005062335
rpl39-202	ENSOTST00005067803	289	47aa	ENSOTSP00005062336

Gene Model

Click here to download ENSOTSG00005029865's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOTSG00005029865's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005005689	89.3617	81.9149	oncorhynchus_tshawytscha	ENSOTSP00005062335	58.7413	53.8462

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	33.5664	30.0699	ciona_intestinalis	ENSCINP00000029714	94.1176	84.3137
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	lepisosteus_oculatus	ENSLOCP00000018749	98.0392	98.0392
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	37.0629	35.6643	clupea_harengus	ENSCHAP00000045129	91.3793	87.931
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	34.965	danio_rerio	ENSDARP00000052760	100	98.0392
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	33.5664	32.8671	carassius_auratus	ENSCARP00000013018	94.1176	92.1569
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	33.5664	32.8671	carassius_auratus	ENSCARP00000013589	94.1176	92.1569
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	32.1678	32.1678	astyanax_mexicanus	ENSAMXP00000000203	92	92
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	34.965	ictalurus_punctatus	ENSIPUP00000028479	100	98.0392
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	34.2657	electrophorus_electricus	ENSEEEP00000030214	94.4444	90.7407
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	oncorhynchus_kisutch	ENSOKIP00005063249	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	oncorhynchus_kisutch	ENSOKIP00005073017	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	43.3566	37.7622	salmo_salar	ENSSSAP00000004375	36.6864	31.9527
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	34.965	xiphophorus_maculatus	ENSXMAP00000013713	87.931	86.2069
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	cyclopterus_lumpus	ENSCLMP00005009428	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	34.965	oreochromis_niloticus	ENSONIP00000058926	98.0769	96.1538
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	haplochromis_burtoni	ENSHBUP00000031620	90.9091	90.9091
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	astatotilapia_calliptera	ENSACLP00000002419	90.9091	90.9091
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	sparus_aurata	ENSSAUP00010043428	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	lates_calcarifer	ENSLCAP00010031386	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	lates_calcarifer	ENSLCAP00010053876	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	ornithorhynchus_anatinus	ENSOANP00000038503	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	35.6643	macaca_fascicularis	ENSMFAP00000031578	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	35.6643	macaca_mulatta	ENSMMUP00000024182	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	monodelphis_domestica	ENSMODP00000048916	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.2657	33.5664	dicentrarchus_labrax	ENSDLAP00005035820	96.0784	94.1176
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	34.965	takifugu_rubripes	ENSTRUP00000027356	98.0769	96.1538
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	36.3636	34.965	oryzias_melastigma	ENSOMEP00000013268	91.2281	87.7193
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	34.965	neolamprologus_brichardi	ENSNBRP00000014993	98.0769	96.1538
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	34.965	pygocentrus_nattereri	ENSPNAP00000015517	100	98.0392
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	35.6643	ictidomys_tridecemlineatus	ENSSTOP00000019328	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	32.8671	30.0699	ciona_savignyi	ENSCSAVP00000006665	92.1569	84.3137
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	36.3636	34.965	poecilia_formosa	ENSPFOP00000017508	85.2459	81.9672
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	34.965	scophthalmus_maximus	ENSSMAP00000056361	98.0769	96.1538
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	35.6643	cottoperca_gobio	ENSCGOP00000035450	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	35.6643	chlorocebus_sabaeus	ENSCSAP00000019248	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	34.965	amphilophus_citrinellus	ENSACIP00000017488	98.0769	96.1538
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	hucho_hucho	ENSHHUP00000083759	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	mastacembelus_armatus	ENSMAMP00000029759	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	33.5664	33.5664	nothobranchius_furzeri	ENSNFUP00015000239	94.1176	94.1176
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	31.4685	30.0699	cynoglossus_semilaevis	ENSCSEP00000003107	91.8367	87.7551
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	31.4685	31.4685	seriola_lalandi_dorsalis	ENSSLDP00000003966	97.8261	97.8261
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.2657	34.2657	paramormyrops_kingsleyae	ENSPKIP00000000873	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.2657	33.5664	larimichthys_crocea	ENSLCRP00005047050	89.0909	87.2727
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	36.3636	35.6643	oryzias_javanicus	ENSOJAP00000038131	57.1429	56.044
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	maylandia_zebra	ENSMZEP00005010452	90.9091	90.9091
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	myripristis_murdjan	ENSMMDP00005032979	100	100
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	36.3636	35.6643	oryzias_sinensis	ENSOSIP00000006041	96.2963	94.4444
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.965	acanthochromis_polyacanthus	ENSAPOP00000010358	94.3396	94.3396
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.2657	34.2657	amphiprion_percula	ENSAPEP00000007653	94.2308	94.2308
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	35.6643	35.6643	denticeps_clupeoides	ENSDCDP00000039864	96.2264	96.2264
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	32.8671	32.8671	sinocyclocheilus_grahami	ENSSGRP00000110099	92.1569	92.1569
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	33.5664	33.5664	cyprinus_carpio_carpio	ENSCCRP00000003015	94.1176	94.1176
ENSOTSG00005029865	oncorhynchus_tshawytscha	ENSOTSP00005062335	34.965	34.2657	cyprinus_carpio_carpio	ENSCCRP00000038681	87.7193	85.9649

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression