RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSOTSG00005025648	Gene ID	112244610	Accession	-
Symbol	uba52	Alias	-	Full Name	ubiquitin-60S ribosomal protein L40-like
Status	Confidence	Length	1478 bases	Strand	Plus strand
Position	5 : 52769238 - 52770715	RNA binding domain	Ribosomal_L40e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOTSP00005052994	Ribosomal_L40e	PF01020	1e-31	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
uba52-201	ENSOTST00005057714	469	128aa	ENSOTSP00005052994

Gene Model

Click here to download ENSOTSG00005025648's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOTSG00005025648's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005000975	22.87	12.5561	oncorhynchus_tshawytscha	ENSOTSP00005052994	39.8438	21.875
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005090442	33.7748	18.543	oncorhynchus_tshawytscha	ENSOTSP00005052994	39.8438	21.875
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005071212	12.4242	7.72727	oncorhynchus_tshawytscha	ENSOTSP00005052994	64.0625	39.8438
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005041218	10.9499	6.72823	oncorhynchus_tshawytscha	ENSOTSP00005052994	64.8438	39.8438
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005037046	6.29371	3.4965	oncorhynchus_tshawytscha	ENSOTSP00005052994	7.03125	3.90625
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005076686	72.093	67.4419	oncorhynchus_tshawytscha	ENSOTSP00005052994	48.4375	45.3125
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005076682	40.1361	34.0136	oncorhynchus_tshawytscha	ENSOTSP00005052994	46.0938	39.0625
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005035421	54.9669	49.0066	oncorhynchus_tshawytscha	ENSOTSP00005052994	64.8438	57.8125
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005011844	7.14286	3.96825	oncorhynchus_tshawytscha	ENSOTSP00005052994	7.03125	3.90625
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005063273	39.0558	35.6223	oncorhynchus_tshawytscha	ENSOTSP00005052994	71.0938	64.8438
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052533	79.4118	77.451	oncorhynchus_tshawytscha	ENSOTSP00005052994	63.2812	61.7188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005037047	98.7805	96.3415	oncorhynchus_tshawytscha	ENSOTSP00005052994	63.2812	61.7188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005087150	61.5385	55.7692	oncorhynchus_tshawytscha	ENSOTSP00005052994	75	67.9688
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052534	82.2785	77.2152	oncorhynchus_tshawytscha	ENSOTSP00005052994	50.7812	47.6562
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052054	70.7865	52.809	oncorhynchus_tshawytscha	ENSOTSP00005052994	49.2188	36.7188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005028281	51.2397	38.0165	oncorhynchus_tshawytscha	ENSOTSP00005052994	48.4375	35.9375
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005090455	59.6154	41.3462	oncorhynchus_tshawytscha	ENSOTSP00005052994	48.4375	33.5938
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005014269	62.1053	43.1579	oncorhynchus_tshawytscha	ENSOTSP00005052994	46.0938	32.0312
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005055517	47.4138	35.3448	oncorhynchus_tshawytscha	ENSOTSP00005052994	42.9688	32.0312
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005081726	37.1795	26.2821	oncorhynchus_tshawytscha	ENSOTSP00005052994	45.3125	32.0312
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005056120	52.381	39.0476	oncorhynchus_tshawytscha	ENSOTSP00005052994	42.9688	32.0312
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005056391	100	100	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	100
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005066656	100	99.2188	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005042996	84.3373	80.7229	oncorhynchus_tshawytscha	ENSOTSP00005052994	54.6875	52.3438
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005068784	60.119	58.3333	oncorhynchus_tshawytscha	ENSOTSP00005052994	78.9062	76.5625

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	95.3125	94.5312	caenorhabditis_elegans	ZK1010.1.1	95.3125	94.5312
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	98.4375	97.6562	drosophila_melanogaster	FBpp0306837	98.4375	97.6562
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	95.3125	92.1875	ciona_intestinalis	ENSCINP00000010307	95.3125	92.1875
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	72.6562	71.0938	eptatretus_burgeri	ENSEBUP00000004699	80.8696	79.1304
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	96.875	93.75	callorhinchus_milii	ENSCMIP00000012025	96.875	93.75
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	97.6562	96.875	latimeria_chalumnae	ENSLACP00000003879	97.6562	96.875
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	98.4375	97.6562	latimeria_chalumnae	ENSLACP00000009213	54.5455	54.1126
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	lepisosteus_oculatus	ENSLOCP00000002515	83.6601	83.0065
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	98.4375	danio_rerio	ENSDARP00000060744	100	98.4375
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	98.4375	carassius_auratus	ENSCARP00000002743	83.6601	82.3529
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	98.4375	carassius_auratus	ENSCARP00000022067	100	98.4375
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	98.4375	carassius_auratus	ENSCARP00000025500	100	98.4375
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	98.4375	astyanax_mexicanus	ENSAMXP00000034187	100	98.4375
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	99.2188	97.6562	ictalurus_punctatus	ENSIPUP00000007381	99.2188	97.6562
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	97.6562	electrophorus_electricus	ENSEEEP00000048836	100	97.6562
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	100	esox_lucius	ENSELUP00000040472	100	100
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	oncorhynchus_kisutch	ENSOKIP00005078931	81.5287	80.8917
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	100	salmo_salar	ENSSSAP00000098259	100	100
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	99.2188	98.4375	gadus_morhua	ENSGMOP00000008109	99.2188	98.4375
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	poecilia_reticulata	ENSPREP00000016516	100	99.2188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	98.4375	97.6562	oryzias_latipes	ENSORLP00000010731	98.4375	97.6562
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	oreochromis_niloticus	ENSONIP00000016035	100	99.2188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	99.2188	94.5312	sparus_aurata	ENSSAUP00010014935	99.2188	94.5312
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	96.875	95.3125	lates_calcarifer	ENSLCAP00010046378	96.875	95.3125
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	96.0938	95.3125	equus_caballus	ENSECAP00000073916	84.8276	84.1379
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	56.25	53.125	heterocephalus_glaber_female	ENSHGLP00000055534	53.3333	50.3704
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	dicentrarchus_labrax	ENSDLAP00005044755	100	99.2188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	99.2188	98.4375	cyprinodon_variegatus	ENSCVAP00000025559	99.2188	98.4375
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	99.2188	98.4375	takifugu_rubripes	ENSTRUP00000009801	99.2188	98.4375
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	99.2188	98.4375	oryzias_melastigma	ENSOMEP00000002833	98.4496	97.6744
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	58.5938	48.4375	neolamprologus_brichardi	ENSNBRP00000000634	73.5294	60.7843
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	kryptolebias_marmoratus	ENSKMAP00000006381	100	99.2188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	97.6562	sorex_araneus	ENSSARP00000000901	100	97.6562
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	96.875	seriola_dumerili	ENSSDUP00000018383	96.9697	93.9394
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	99.2188	96.875	pygocentrus_nattereri	ENSPNAP00000019133	99.2188	96.875
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	95.3125	91.4062	ciona_savignyi	ENSCSAVP00000003728	88.4058	84.7826
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	poecilia_formosa	ENSPFOP00000001094	100	99.2188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	scophthalmus_maximus	ENSSMAP00000034350	100	99.2188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	labrus_bergylta	ENSLBEP00000037051	100	99.2188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	cottoperca_gobio	ENSCGOP00000028836	100	99.2188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	99.2188	96.875	amphilophus_citrinellus	ENSACIP00000025696	99.2188	96.875
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	99.2188	98.4375	tetraodon_nigroviridis	ENSTNIP00000013085	99.2188	98.4375
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	98.4375	mastacembelus_armatus	ENSMAMP00000009351	100	98.4375
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	94.5312	89.8438	saccharomyces_cerevisiae	YIL148W	94.5312	89.8438
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	94.5312	89.8438	saccharomyces_cerevisiae	YKR094C	94.5312	89.8438
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	96.875	93.75	leptobrachium_leishanense	ENSLLEP00000008643	70.8571	68.5714
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	betta_splendens	ENSBSLP00000000745	100	99.2188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	97.6562	amphiprion_ocellaris	ENSAOCP00000028617	100	97.6562
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	99.2188	96.0938	seriola_lalandi_dorsalis	ENSSLDP00000026808	99.2188	96.0938
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	92.1875	88.2812	cebus_imitator	ENSCCAP00000011005	92.9134	88.9764
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	paramormyrops_kingsleyae	ENSPKIP00000021658	100	99.2188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	97.6562	larimichthys_crocea	ENSLCRP00005064469	100	97.6562
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	99.2188	98.4375	oryzias_javanicus	ENSOJAP00000023193	86.9863	86.3014
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	scleropages_formosus	ENSSFOP00015033218	100	99.2188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	98.4375	96.875	myripristis_murdjan	ENSMMDP00005035510	98.4375	96.875
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	59.375	50.7812	pundamilia_nyererei	ENSPNYP00000005212	66.6667	57.0175
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	98.4375	97.6562	oryzias_sinensis	ENSOSIP00000041566	96.9231	96.1538
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	77.3438	72.6562	anser_brachyrhynchus	ENSABRP00000005779	96.1165	90.2913
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	97.6562	amphiprion_percula	ENSAPEP00000023191	100	97.6562
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	64.8438	57.0312	denticeps_clupeoides	ENSDCDP00000059260	50.9202	44.7853
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	72.6562	71.0938	sinocyclocheilus_grahami	ENSSGRP00000083272	97.8947	95.7895
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	99.2188	stegastes_partitus	ENSSPAP00000014992	100	99.2188
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	98.4375	cyprinus_carpio_carpio	ENSCCRP00000013341	87.0748	85.7143
ENSOTSG00005025648	oncorhynchus_tshawytscha	ENSOTSP00005052994	100	98.4375	cyprinus_carpio_carpio	ENSCCRP00000029926	84.2105	82.8947

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression