RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSOTSG00005017732	Gene ID		Accession	-
Symbol	calr3b	Alias	-	Full Name	calreticulin 3b
Status	Confidence	Length	8944 bases	Strand	Plus strand
Position	PEKY01001321.1 : 108206 - 117149	RNA binding domain	Calreticulin
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOTSP00005037564	Calreticulin	PF00262	5.5e-79	1
ENSOTSP00005037564	Calreticulin	PF00262	5.5e-79	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSOTST00005040846	1659	420aa	ENSOTSP00005037564

Gene Model

Click here to download ENSOTSG00005017732's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOTSG00005017732's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005066610	84.4186	74.8837	oncorhynchus_tshawytscha	ENSOTSP00005037564	86.4286	76.6667
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005064614	47.9016	41.9682	oncorhynchus_tshawytscha	ENSOTSP00005037564	78.8095	69.0476
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005055753	79.8561	65.4676	oncorhynchus_tshawytscha	ENSOTSP00005037564	79.2857	65
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005059894	80	64.25	oncorhynchus_tshawytscha	ENSOTSP00005037564	76.1905	61.1905
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005052117	32.0388	18.2039	oncorhynchus_tshawytscha	ENSOTSP00005037564	31.4286	17.8571
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005094656	38.0126	26.0252	oncorhynchus_tshawytscha	ENSOTSP00005037564	57.381	39.2857
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005098061	36.6003	24.6554	oncorhynchus_tshawytscha	ENSOTSP00005037564	56.9048	38.3333

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	73.0952	56.4286	caenorhabditis_elegans	Y38A10A.5.1	77.7215	60
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	80	61.1905	petromyzon_marinus	ENSPMAP00000003021	78.6885	60.1874
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	80.2381	69.5238	callorhinchus_milii	ENSCMIP00000044200	81.2048	70.3614
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	82.8571	73.3333	latimeria_chalumnae	ENSLACP00000020782	83.6538	74.0385
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	86.9048	77.381	lepisosteus_oculatus	ENSLOCP00000004438	85.6807	76.2911
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	83.8095	69.5238	clupea_harengus	ENSCHAP00000004633	79.638	66.0633
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	86.4286	77.1429	danio_rerio	ENSDARP00000135281	87.0504	77.6978
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	85.4762	75.4762	carassius_auratus	ENSCARP00000049111	81.7768	72.2096
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	88.0952	77.381	carassius_auratus	ENSCARP00000082668	88.3055	77.5656
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	83.5714	75.7143	carassius_auratus	ENSCARP00000083241	84.1727	76.259
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	70.4762	61.1905	carassius_auratus	ENSCARP00000084939	81.5427	70.7989
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	87.381	77.1429	astyanax_mexicanus	ENSAMXP00000015561	86.7612	76.5957
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	86.6667	77.619	ictalurus_punctatus	ENSIPUP00000007845	85.8491	76.8868
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	86.4286	77.381	electrophorus_electricus	ENSEEEP00000000433	86.6348	77.5656
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	92.619	86.4286	esox_lucius	ENSELUP00000014024	93.5096	87.2596
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	98.0952	98.0952	oncorhynchus_kisutch	ENSOKIP00005085718	98.801	98.801
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	98.0952	97.8571	oncorhynchus_mykiss	ENSOMYP00000004384	98.801	98.5611
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	91.4286	89.5238	salmo_salar	ENSSSAP00000065694	91.2114	89.3112
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	90.2381	80	gadus_morhua	ENSGMOP00000013388	89.3868	79.2453
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	92.619	90.9524	salmo_trutta	ENSSTUP00000103679	95.5774	93.8575
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	88.3333	77.8571	fundulus_heteroclitus	ENSFHEP00000026864	88.9688	78.4173
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	89.2857	78.5714	poecilia_reticulata	ENSPREP00000018198	89.7129	78.9474
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	86.6667	76.1905	xiphophorus_maculatus	ENSXMAP00000034683	81.6143	71.7489
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	87.1429	75.7143	oryzias_latipes	ENSORLP00000022552	88.835	77.1845
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	89.5238	78.5714	cyclopterus_lumpus	ENSCLMP00005041706	88.6792	77.8302
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	89.2857	80.7143	oreochromis_niloticus	ENSONIP00000073655	87.4126	79.021
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	89.7619	80.7143	haplochromis_burtoni	ENSHBUP00000028911	89.5487	80.5226
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	90	80.9524	astatotilapia_calliptera	ENSACLP00000015702	89.5735	80.5687
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	88.8095	79.0476	sparus_aurata	ENSSAUP00010067607	83.6323	74.4395
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	88.8095	79.0476	lates_calcarifer	ENSLCAP00010036322	87.7647	78.1176
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	90	79.7619	cyprinodon_variegatus	ENSCVAP00000014845	89.7862	79.5724
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	76.4286	67.619	erpetoichthys_calabaricus	ENSECRP00000031366	80.8564	71.5365
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	90	80.9524	takifugu_rubripes	ENSTRUP00000024065	88.9412	80
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	77.1429	67.381	oryzias_melastigma	ENSOMEP00000029153	88.5246	77.3224
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	90.2381	81.4286	neolamprologus_brichardi	ENSNBRP00000016056	89.5981	80.8511
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	90.9524	80.9524	seriola_dumerili	ENSSDUP00000014345	90.7363	80.7601
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	85.9524	77.381	pygocentrus_nattereri	ENSPNAP00000035367	74.5868	67.1488
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	89.0476	78.5714	poecilia_latipinna	ENSPLAP00000003318	90.1205	79.5181
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	86.1905	76.9048	poecilia_formosa	ENSPFOP00000002156	92.3469	82.398
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	89.7619	80.2381	scophthalmus_maximus	ENSSMAP00000041269	88.9151	79.4811
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	88.3333	79.0476	labrus_bergylta	ENSLBEP00000022468	88.9688	79.6163
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	87.1429	78.0952	amphilophus_citrinellus	ENSACIP00000010291	89.4865	80.1956
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	96.6667	95.9524	hucho_hucho	ENSHHUP00000078118	88.2609	87.6087
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	90	80.2381	mastacembelus_armatus	ENSMAMP00000006586	72.8324	64.9326
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	43.5714	27.619	saccharomyces_cerevisiae	YAL058W	36.4542	23.1076
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	87.381	77.381	gasterosteus_aculeatus	ENSGACP00000022325	88.4337	78.3133
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	88.5714	80.4762	nothobranchius_furzeri	ENSNFUP00015010243	84.738	76.9932
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	89.2857	80	cynoglossus_semilaevis	ENSCSEP00000024406	88.2353	79.0588
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	89.2857	77.619	betta_splendens	ENSBSLP00000055862	88.6525	77.0686
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	89.2857	79.2857	amphiprion_ocellaris	ENSAOCP00000001900	87.6168	77.8037
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	90.7143	80.7143	seriola_lalandi_dorsalis	ENSSLDP00000012590	90.4988	80.5226
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	83.8095	73.5714	paramormyrops_kingsleyae	ENSPKIP00000012641	85.4369	75
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	84.2857	72.8571	paramormyrops_kingsleyae	ENSPKIP00000028736	85.3012	73.7349
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	88.8095	78.3333	larimichthys_crocea	ENSLCRP00005030137	85.9447	75.8064
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	90.2381	81.1905	maylandia_zebra	ENSMZEP00005032785	89.5981	80.6147
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	86.6667	76.9048	scleropages_formosus	ENSSFOP00015012379	78.9588	70.0651
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	78.5714	67.8571	scleropages_formosus	ENSSFOP00015046845	74.1573	64.0449
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	89.2857	80.9524	myripristis_murdjan	ENSMMDP00005028478	89.2857	80.9524
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	87.381	76.9048	hippocampus_comes	ENSHCOP00000001490	88.2212	77.6442
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	90	80.9524	pundamilia_nyererei	ENSPNYP00000009842	89.5735	80.5687
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	87.381	76.1905	oryzias_sinensis	ENSOSIP00000040466	89.0777	77.6699
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	89.0476	79.5238	acanthochromis_polyacanthus	ENSAPOP00000022002	75.8621	67.7485
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	89.5238	79.2857	amphiprion_percula	ENSAPEP00000031696	88.0562	77.9859
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	86.9048	76.6667	denticeps_clupeoides	ENSDCDP00000025257	86.6983	76.4846
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	81.9048	73.0952	sinocyclocheilus_grahami	ENSSGRP00000009481	71.0744	63.4298
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	83.3333	74.2857	sinocyclocheilus_grahami	ENSSGRP00000081943	72.7651	64.8649
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	47.1429	40	stegastes_partitus	ENSSPAP00000017954	73.3333	62.2222
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	83.8095	74.2857	cyprinus_carpio_carpio	ENSCCRP00000157544	84.0095	74.463
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	84.5238	75.4762	cyprinus_carpio_carpio	ENSCCRP00000151267	84.323	75.2969
ENSOTSG00005017732	oncorhynchus_tshawytscha	ENSOTSP00005037564	88.8095	79.5238	anabas_testudineus	ENSATEP00000031160	86.5429	77.4942

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression