RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSOTSG00005007501	Gene ID	112248349	Accession	-
Symbol	snrpd3	Alias	-	Full Name	small nuclear ribonucleoprotein Sm D3
Status	Confidence	Length	911 bases	Strand	Minus strand
Position	4 : 20981114 - 20982024	RNA binding domain	LSM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSOTSP00005014956	LSM	PF01423	8.2e-15	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
snrpd3-201	ENSOTST00005016330	390	127aa	ENSOTSP00005014956

Gene Model

Click here to download ENSOTSG00005007501's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSOTSG00005007501's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005093314	96.875	94.5312	oncorhynchus_tshawytscha	ENSOTSP00005014956	97.6378	95.2756
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005076321	96.875	94.5312	oncorhynchus_tshawytscha	ENSOTSP00005014956	97.6378	95.2756
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005091831	66.4179	65.6716	oncorhynchus_tshawytscha	ENSOTSP00005014956	70.0787	69.2913
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005084328	52.5346	50.2304	oncorhynchus_tshawytscha	ENSOTSP00005014956	89.7638	85.8268
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005053145	42.6752	27.3885	oncorhynchus_tshawytscha	ENSOTSP00005014956	52.7559	33.8583
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005066686	44.9664	28.8591	oncorhynchus_tshawytscha	ENSOTSP00005014956	52.7559	33.8583
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005030823	44.3609	30.0752	oncorhynchus_tshawytscha	ENSOTSP00005014956	46.4567	31.4961
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005008782	37.1069	25.1572	oncorhynchus_tshawytscha	ENSOTSP00005014956	46.4567	31.4961

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	72.4409	62.9921	caenorhabditis_elegans	Y116A8C.42.1	67.6471	58.8235
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	79.5276	76.378	drosophila_melanogaster	FBpp0087094	66.8874	64.2384
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	87.4016	77.1654	eptatretus_burgeri	ENSEBUP00000024487	42.6923	37.6923
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	97.6378	96.063	callorhinchus_milii	ENSCMIP00000030273	59.6154	58.6538
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	98.4252	96.8504	clupea_harengus	ENSCHAP00000002046	98.4252	96.8504
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	96.8504	95.2756	danio_rerio	ENSDARP00000011226	96.8504	95.2756
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	96.063	92.9134	carassius_auratus	ENSCARP00000054778	95.3125	92.1875
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	86.6142	84.252	ictalurus_punctatus	ENSIPUP00000004407	79.7101	77.5362
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	99.2126	99.2126	esox_lucius	ENSELUP00000026098	99.2126	99.2126
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	100	100	oncorhynchus_kisutch	ENSOKIP00005095001	100	100
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	100	100	oncorhynchus_mykiss	ENSOMYP00000026198	100	100
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	100	99.2126	salmo_salar	ENSSSAP00000086814	100	99.2126
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	100	99.2126	salmo_trutta	ENSSTUP00000050920	100	99.2126
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	85.0394	81.8898	mus_spicilegus	ENSMSIP00000006658	84.375	81.25
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	96.8504	96.063	pygocentrus_nattereri	ENSPNAP00000004099	86.014	85.3147
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	79.5276	71.6535	ciona_savignyi	ENSCSAVP00000007885	78.2946	70.5426
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	97.6378	97.6378	hucho_hucho	ENSHHUP00000045539	86.1111	86.1111
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	58.2677	37.0079	saccharomyces_cerevisiae	YLR147C	73.2673	46.5347
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	83.4646	81.1024	amphiprion_ocellaris	ENSAOCP00000012329	98.1481	95.3704
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	99.2126	96.063	hippocampus_comes	ENSHCOP00000011552	99.2126	96.063
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	96.8504	94.4882	denticeps_clupeoides	ENSDCDP00000032825	96.8504	94.4882
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	88.189	84.252	neovison_vison	ENSNVIP00000027125	71.7949	68.5897
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	97.6378	95.2756	sinocyclocheilus_grahami	ENSSGRP00000095723	97.6378	95.2756
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	97.6378	95.2756	sinocyclocheilus_grahami	ENSSGRP00000084620	97.6378	95.2756
ENSOTSG00005007501	oncorhynchus_tshawytscha	ENSOTSP00005014956	97.6378	94.4882	cyprinus_carpio_carpio	ENSCCRP00000137881	89.8551	86.9565

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression